RNA id: TU399552


Basic Information

Item Value
RNA id TU399552
length 392
lncRNA type intronic
GC content 0.46
exon number 2
gene id G337304
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3489853 ~ 3491029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCACCCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCGACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCACCCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCACCCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACATCAACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCGACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACCTCGACCTCGCTTATATCAGCGTTATTACAGCTACAGAGCGTACTTCACATCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399479 lncRNA upstream 190545 3212511 ~ 3299308 (+) True G337233
TU399433 lncRNA upstream 387662 3095997 ~ 3102191 (+) True G337197
TU399424 lncRNA upstream 455459 3033844 ~ 3034394 (+) True G337195
TU399423 lncRNA upstream 470443 3019110 ~ 3019410 (+) True G337194
XR_003404701.2 lncRNA upstream 494582 2926524 ~ 2995271 (+) True LOC113546290
TU399520 lncRNA downstream 219673 3710702 ~ 3712919 (+) True G337273
TU399623 lncRNA downstream 252108 3743137 ~ 3745935 (+) True G337374
TU399611 lncRNA downstream 268627 3759656 ~ 3762176 (+) True G337363
XR_003404699.2 lncRNA downstream 278556 3769585 ~ 3771026 (+) True LOC113546270
TU399609 lncRNA downstream 278626 3769655 ~ 3770969 (+) False LOC113546270
XM_034298427.1 mRNA upstream 184570 3297910 ~ 3305283 (+) True LOC113546219
XM_026945983.2 mRNA upstream 184570 3301167 ~ 3305283 (+) False LOC113546219
XM_034298426.1 mRNA upstream 216926 3268938 ~ 3272927 (+) True znf750
XM_034298349.1 mRNA upstream 351880 3128704 ~ 3137973 (+) True si:ch211-165g14.1
XM_034298622.1 mRNA upstream 362123 3112241 ~ 3127730 (+) False mfsd13al
XM_034298524.1 mRNA downstream 232160 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA downstream 233834 3724863 ~ 3732164 (+) True tnfsf18
XM_034298525.1 mRNA downstream 233834 3724863 ~ 3730421 (+) False tnfsf18
XM_026945969.2 mRNA downstream 320597 3811626 ~ 3821302 (+) True qtrt1
XM_026946051.2 mRNA downstream 334930 3825959 ~ 3929254 (+) True LOC113546282
XR_004577078.1 other upstream 1097375 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1097381 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1097478 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1119777 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1168436 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 861493 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2848478 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3113628 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3219986 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4791931 8282960 ~ 8285204 (+) True G340208

Expression Profile