RNA id: XR_003404699.2


Basic Information

Item Value
RNA id XR_003404699.2
length 491
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC113546270
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3769585 ~ 3771026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCCAGTGTTCAGACTACCTGTTCATTACGCTGCAGCTGAACAGTAGTCCGCACATTGGTTAGGCTGggccgggacacacacacgtcagaaaAGACGAAGCTATAACTTTTTAGCTTTGGGATGCAGGAGAGGGACTCGGCGGTCAGGACGAACCAGTACTCCTTGGATCCTCCCTTCATGAAGCTGATGTTGATGGTGAGCCAGCCTTTGCGGATCACCTGTGCAGAGGGACGGGAGGGAAAACGTCACAGGGCAGCGGAGACATTCGACtttaccaaaacacacacagacacagacacacagacacacacacatgtctcaGGCTgagagcagctgtgtgtgaaaacactcACAGTGAACACCTGCTCACACTTACCTGCACAGGAACATGGGTTCGAACAGGAACGACAATCTGTACTGCGTGATTTgcaaaattgttatttaaaatgactatttattatttttattaaaattgttcaTGAAAGTTGa

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0060026 convergent extension biological_process
GO:0009790 embryo development biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399611 lncRNA upstream 7409 3759656 ~ 3762176 (+) True G337363
TU399623 lncRNA upstream 23650 3743137 ~ 3745935 (+) True G337374
TU399520 lncRNA upstream 56666 3710702 ~ 3712919 (+) True G337273
TU399552 lncRNA upstream 278556 3489853 ~ 3491029 (+) True G337304
TU399479 lncRNA upstream 470277 3212511 ~ 3299308 (+) True G337233
TU399613 lncRNA downstream 4660 3775686 ~ 3779213 (+) True G337365
TU399647 lncRNA downstream 33126 3804152 ~ 3805620 (+) True G337389
TU399633 lncRNA downstream 165145 3936171 ~ 4002009 (+) False G337381
TU399631 lncRNA downstream 172699 3943725 ~ 3959629 (+) False G337381
TU399637 lncRNA downstream 224229 3995255 ~ 4002612 (+) True G337381
XM_034298524.1 mRNA upstream 37421 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA upstream 37421 3724863 ~ 3732164 (+) True tnfsf18
XM_034298525.1 mRNA upstream 39164 3724863 ~ 3730421 (+) False tnfsf18
XM_034298474.1 mRNA upstream 134193 3424305 ~ 3635392 (+) True adgrl1a
XM_026945969.2 mRNA downstream 40600 3811626 ~ 3821302 (+) True qtrt1
XM_026946051.2 mRNA downstream 54933 3825959 ~ 3929254 (+) True LOC113546282
XM_034298636.1 mRNA downstream 194351 3965377 ~ 3976866 (+) False tecra
XM_026946069.2 mRNA downstream 194355 3965381 ~ 3976866 (+) True tecra
XM_034298635.1 mRNA downstream 196010 3967036 ~ 3976257 (+) False tecra
XR_004577078.1 other upstream 1377107 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1377113 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1377210 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1399509 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1448168 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 581496 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2568481 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2833631 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2939989 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4511934 8282960 ~ 8285204 (+) True G340208

Expression Profile