RNA id: TU399613


Basic Information

Item Value
RNA id TU399613
length 3504
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G337365
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3775686 ~ 3779213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCACAATCACTGAGCACAGTGAAATGCTCTCAGTGAGTTAAACACTATCGACTGGGACACCGACGAGCTTAAAATAAGTTAGTTTAATAGCCAAAATGAAATATTAGTGTTTAATAATCAAAAAAGTCCCAACtgcaagagagagataaagagatttCTCTAAATAAAACGgagttcattcagctacagctTGCCAGATTATCATCACTGATAGCACGCAATGAGGATTTGAAATTCAGGATcaagtcaataaataaatagcattcaGACTCAGTTAGTctaatttattcatgtttgtatTTAGCGCTTAATTAGATTAACACTCATTTAATTTCTTAATCTGATCCAGACGCTTGTACATACAAAGAGAAATAGGCTTATAATGTACAAGCTGAAAGAAAAGCCTGGTTTCTCTTGACTTAAAATGATAAACTGAGATGCAACAAatccatttataccacagtgctgttgaattctggattctgattggtcgaaaggtgtcgattaattttctagaacagcagctctgacagtagtgcagctacaaatcacaggtttatatcaatgcgctcgTTTATATAACGCTTTACCGTTTCTGGCGTACGGTCCACATTAACTGATGAAAAACAATAAGGATATAATCGTTTAACTttccatttaacatttatggaaggagtctccaatgtcagtgctgtgtaacagtcagaggtaaagctgtaactttacgctttccaacatcttcaggacagaagagtttacgctttgtgctttctcagtaacatgacaagctgcgtttttttccttcttattaacttctagtgagagagagagaaaaaaagagaggctggtgagtgaacgGCTGTTAATAACGTATAACGtaataacgtaagtgagaacttgtttcatggatgtgccacattaaatgtaactataaaaggataaaaagtacgatgataaagaaaatttaatcgactgcaaattgctgtggtataagaggaataaaacactttgggatgtgctttaattggaaaataatcaactctgtgTTATCACATCACCctgatgttaattattttcctaaaacagcacatggTTTATTCTTTACCTAGCTGCTTTCTGTACTGAGCAAAAGTGTTGTGATAATTGTGTGATTTTAGTTAGAGACAGGAAACATCAGAGAGACACACGcgctcgctcacacacacacgcgcacacacacacacatacatacacaagtGAATGGCACACACATGATTTGTGAGTGAGGTTCAGCCCCGGCTCCTTATTGGTTGTTTTTGTCCCTCCGACCCCGCCCCTTCCCTCCCACAGCCCATTCCTCCACAAGGCAAACTCGGCGCCCCCTAGAGGAGATGCCAGCACTCAGCCAGACTGCAGGACAACCGAGGCATCACTTTTATTACCACGAATTAATGCAGGCTACCACTAAAGGAGTACTTCAGCAGTTTTCAACCACCGTATCTGTAGTGCATGTGTGATTTTACTACCACAGATgagaatttcaaattgtttctctgtactgagggaaaaaaaaacccaataaaaTCCTCTTTACACTAAACTCACTCACAATGGAAGTCTGAGGGCAGATAATGGGGCGTCAATGAAAATGCAGATTTTTGTAGAAAGCTTGTACCGTCTCTTCAGTCAGAGGTGTGTAGAAGTCGTCCTTCCATACTTTTTCAGGGGGAAGGATTTTCTGTACTTGTAGTGCGGCTCTGGTGGCGCATGAATAccataaaagctttaaaaagtgtCAAGTAACCAGCACTACTTTTTttggaaagttggataaaaTGCCACAAATACAGCTTTGGTCAGACTTTCACTCTTCTGAAcacttttattgtttgtttgtaagaAGTGTGGTTTTGAATTTGTGTGAATACTGTATAACTATGTATTTTGTAGATATGTCTTGACAGAATTCAGCATCTGCCCTTAAGCTTGATTTATGCGTCCTGGATTAGACAAAAGGAAGCATTTTGGAAAGTTTTCTCTCTGAAGCCGAAATGTCCGAACTGCCAGCCCACCTTCGCAGCAATTGGCTGGCAGAGATGTGTTAGAATTAATCAATTTCATCAACAATTTAGTTTAGATAAATGCTACATTGTTTAATTTTACTaacaatctaatctaatctaatctaacgTGTGCTTTATAACTGAGAAACGAATGTAGAAAATAGAACATTATTCTGTCAACAAAGTAGTTTAAcgacatttttctctttcaaatCAGTGCAGTTGGAGTTGTTTTCACTTTTAAAGGTAAACTTCACCTTGAACGACTTCCATATTGTCTTTATAATCAATGGCATCCAAGACTCATTATAACGAAATTTTGAGTTGACTTCTTTAGTTTTAACATCTCATCGATTTTACTTTGGTCcccagtttcctacattacccacaatgctgttcaactCCCTGCTGATAATGGTGCactgggatttagcccttgttTCATCTTTATGGTAAGTGATGCAGTGGCACTGTAGTCTTTTAGTCTTTCCAGCTCTCTGATttcttcatctgtacactcggctcaaacagatcagcttccaaagcatCAACTTTCTTATTAATACCGAAGTCAAGATCACTGTGCTGGTCATGTTGTAGATCGCTGACTAGCCGAGCCAAATCTCTGCCATAACTTAACAACCGTTAAGATCAGATTTCAATTATACAAAAGCCTCGAAACATAAATGCTCTGGGCTTTCTGAAGTTCATGTCCAGCGGCTCTGAGGTGATGTTCTGATGAGGCATAAACCATGGTTTTGGAGTAGACAGGTTCTCTGTTCGCTTCCTCACTGCAGAGAAACATTGAAATTCATGTTCGTGGTAATCACACATTCACTATACACGCTGTGGATATGGATTAGGATAAAAAGTGCTGGAGTGCTCCTttaaattataacaaatatatcAATATGACATTGTTAGTAGCGTTTGCATTAACGTGTTTAATTACATGTTCAAATTACTTGTGTGTTAGAGAAGTGGTGCTTAATTGTAGCGTAACGAGACTTGGAGCAGAATTAGGGCCATTACCGATTACTGGTAACAgcgatgaaaaaaaaactagcagCCAGTGCGATTCCTCCCGGGTTCCACCATTTAAAGTGTGAGAACTGGAATACCTTTTCTGGTGTTCCCTCTATGAGTCCGCTTAGCTGCGGGGTAGAACAAAACAATTTCTTCGGTTAAAACCAGAATCTAAATGATACACCGAGCGGCTTGTtccaaacaaattaaacaaaacgAATAGAAATACGTGGACGCCACTGGTTGGAAAACGGTCGTAGCCTCAgttctcctgattggctgagcccTGGTGACCCCCTGACCGGGCAAAGTTGGTTTGTGTGGGGTACTTACCAGTATTTCACCCTGCAGTGATGGGGGTGAGGTTAGGACAAGGGGGAAAATCAAGTCAGAGGACAAGCAAAAAGCGAGGGAAAGACATGTACAACATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404699.2 lncRNA upstream 4660 3769585 ~ 3771026 (+) True LOC113546270
TU399609 lncRNA upstream 4717 3769655 ~ 3770969 (+) False LOC113546270
TU399611 lncRNA upstream 13510 3759656 ~ 3762176 (+) True G337363
TU399623 lncRNA upstream 29751 3743137 ~ 3745935 (+) True G337374
TU399520 lncRNA upstream 62767 3710702 ~ 3712919 (+) True G337273
TU399647 lncRNA downstream 24939 3804152 ~ 3805620 (+) True G337389
TU399633 lncRNA downstream 156958 3936171 ~ 4002009 (+) False G337381
TU399631 lncRNA downstream 164512 3943725 ~ 3959629 (+) False G337381
TU399637 lncRNA downstream 216042 3995255 ~ 4002612 (+) True G337381
TU399638 lncRNA downstream 216042 3995255 ~ 4043189 (+) False G337381
XM_034298524.1 mRNA upstream 43522 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA upstream 43522 3724863 ~ 3732164 (+) True tnfsf18
XM_034298525.1 mRNA upstream 45265 3724863 ~ 3730421 (+) False tnfsf18
XM_034298474.1 mRNA upstream 140294 3424305 ~ 3635392 (+) True adgrl1a
XM_026945969.2 mRNA downstream 32413 3811626 ~ 3821302 (+) True qtrt1
XM_026946051.2 mRNA downstream 46746 3825959 ~ 3929254 (+) True LOC113546282
XM_034298636.1 mRNA downstream 186164 3965377 ~ 3976866 (+) False tecra
XM_026946069.2 mRNA downstream 186168 3965381 ~ 3976866 (+) True tecra
XM_034298635.1 mRNA downstream 187823 3967036 ~ 3976257 (+) False tecra
XR_004577078.1 other upstream 1383208 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1383214 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1383311 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1405610 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1454269 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 573309 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2560294 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2825444 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2931802 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4503747 8282960 ~ 8285204 (+) True G340208

Expression Profile