RNA id: TU399623


Basic Information

Item Value
RNA id TU399623
length 2799
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G337374
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3743137 ~ 3745935 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAAAGCCTTTCACTACATAAACTATAAAAAGACTGATAGCaaagataaaataagaataaattataaaaataactaatattgtgcaaaaaaaaaacctctttgaCCTTTAATCATGTCCAGTAGCGAAAGAATCAATTGAGTTTAAAAAGATTTATGCAAATTTTACATTGAaccaatgttaaaatgtttttgtgaaaagTTGTAATTGTAATAGTTGTATTTCATTAGAATCTTTATAGTCCTCAGTATGAGTCTCTCTATATTTCTGCCTTTGTCTTGATGCAAAAGCTAAATAcctttatattaattaataaactttaCATTACTGTatgaaaagtttttaaataGTTTTCCACTGAGACATGGTATGttattgtaataattaaatgatgccctcatgagaaataaataaaataatgaagttaGTCCAAATGCCTGAGTTGTGAAAGGGCTGTGCAGAATGTTGTATGCTCAAAACTGTATACATTCAAACCACAATATTTCAGGTAAACGTTGACAAaatattcattacattttttgaTATCTGGTGTTTAAAAAATGGTACAAAGCAACTATGTACAACTGTCAGCTTTTGGTGGTAATTTTACCAgtgatgtgatcatgtgattatCGGCTTGACTACAAACAAGCCAGCTGTGTAGCAGTTTCTAGCTAAGtattataatttcatttattgcacctctgatttgaaaaaaaaataaataaattaccatAAACtgtgttggttggttggttggttgaaGTTCAATACCAATGTTTTTTAACTGAGTCAGAATGATGTTATAATCATAGACGCCAATGTATGATTTCATTGTGGGTGCTCATAATTGCCTACAAGTGCGTGACATCATACAGTTCATGACAGTGATATTCCAGCCAGTGTTGCTAATTTGGCAAATTTGTCTTAACATTTAGTGGCTTTTTTTTATAGTCACTGCGGTTTTGCAATATGGAGttattttagctatttttttgaaaaagcacTATTTGATGATTTTTAACTATTTTCAAAACTAGCACACTACCTACATGTGTCAAGAGGTTTAAACATCCAGGCCCTACTGTACAGATACTACTGTACCACATTTTCAGCCAATCAATCTAACTGTATTCCACCAATCACTGAGTACTTGCTGAATGATGGATTTGCGCTCTTAATCATCCTCTGTGTAGGCCGTACATGTAGTTAAAATGACAGAGAACATAATACAAGCAACATTTTAGAGATTGTTGGATGAACTCAAGACCTTTTTGCAAGGTGTGTATGGATTGTTTGTACTGCTGAGGAATAATCTGATGCAGAAACTGAGTGTCCTACAGGTCTGGTATGCTTCCAAGTTTGGCAACttgtagtaaataaaaaaaaaattaaaagtggaGAATTTTGTAGGTTTTATTGGAGCTTTTCAGTTGGAGAAGTTTTTGGAATGTTGATTAACGTTGTGTAAAATTACATTGCTCAAGGTTTGCCCTTCTACTTTGACAGAAAAATATGTTTCTAATGACAGAACTTATCTACACTGTTCTGTTTGGGTAATCAACAGCTCTAGCAGTACAGCGAGTCTCACTCATTGATTCAGGAGCcggaaataagaaatatatggcaccaaaaaacatggaaaatgttTCCCCCTTCTGTTATTGTCTGCATCCCAAGCCACATACCAGAGCAACAAATACAATGTCAAAATTGTACACTGCCAGAAATTACCTGTTTCCTTAGGACACGGTTTCTCAAACGTTTTGGAGCCAGAGAGCCGgtgctgatttttttccaaacctaatccaactattcaaatacatacagtaatattctggctatttattagagccagagtgctttttattcctgaacagACCACATTAACCCCAAGTAAATTATTTATAGTCTTACTTGCTTTTAAGTTGAGGTATGGGTTAAACCAATTCAGTTTAAGCGACCAgtcaaacaatacatttttaaaacagtcGTGGACCCTCTGGCTATACGTCATGGGCCCTGGGGGTCGTCAGACCCACTTTCAAAATGGATACCATGCGGGCGGTTTTACCACACTATATAGTGCGGGAGTGCACAGTTTGGGACTGAGCCTTTAAATGGCCACCggtcacaaaaaataaatgtcgCTTTGTTGTGTCGCATCATTGATGGTTTGAACAGGCAATATTGAAGACTGAAATTTTGTCTAAAATGGACACTACAAGAGATAATATCACTAAAATACCACTATTACCATTATACTCTAACAGGTGTTGTCTTTACCAAAGTGTGGTGtatatttttaactgaaatgtCTAAATATGGGATATTTAAATCCTAAACATTGGGGGTTCTCAAGCTCCAGAGCACCCACAAAGCTGGCGCCTATGGTTATAAATACAGAGCTAAATTCTGTCTACAGCATAAACATGCCGAAAATGTTATCAGCTGAATAATGCAGACGAATCAAAGAGCCGTTGTTCACATGAACAAAAACAGCATCTTCCTTGTACAGATGGAAGACCCCGCCCAGGAAGCTGTTCCTCATGCTGCCTTTGTTTGAGTTTGAATTGTGTCTATAGTATGTAAGGAGCGTGATAGAATTACCCAGATAACGCGTTGTGTTCTTTTTCACCATCTGAATGAAAGGAGGGCCTTCTGCACTGTAGCTAAGCTTAGAGTACACGTAGTAGTAGCCCTCCTTCTGAACGATCAGTTTTCCATCTCTGTACTTGAGCTCATAAAGGATGGAGTCTCCATTTTCCTTCCATTCCATGATTCCATCCTTTTTAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399520 lncRNA upstream 30218 3710702 ~ 3712919 (+) True G337273
TU399552 lncRNA upstream 252108 3489853 ~ 3491029 (+) True G337304
TU399479 lncRNA upstream 443829 3212511 ~ 3299308 (+) True G337233
TU399433 lncRNA upstream 640946 3095997 ~ 3102191 (+) True G337197
TU399424 lncRNA upstream 708743 3033844 ~ 3034394 (+) True G337195
TU399611 lncRNA downstream 13721 3759656 ~ 3762176 (+) True G337363
XR_003404699.2 lncRNA downstream 23650 3769585 ~ 3771026 (+) True LOC113546270
TU399609 lncRNA downstream 23720 3769655 ~ 3770969 (+) False LOC113546270
TU399613 lncRNA downstream 29751 3775686 ~ 3779213 (+) True G337365
TU399647 lncRNA downstream 58217 3804152 ~ 3805620 (+) True G337389
XM_034298524.1 mRNA upstream 10973 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA upstream 10973 3724863 ~ 3732164 (+) True tnfsf18
XM_034298525.1 mRNA upstream 12716 3724863 ~ 3730421 (+) False tnfsf18
XM_034298474.1 mRNA upstream 107745 3424305 ~ 3635392 (+) True adgrl1a
XM_034298475.1 mRNA upstream 107745 3424305 ~ 3635392 (+) False adgrl1a
XM_026945969.2 mRNA downstream 65691 3811626 ~ 3821302 (+) True qtrt1
XM_026946051.2 mRNA downstream 80024 3825959 ~ 3929254 (+) True LOC113546282
XM_034298636.1 mRNA downstream 219442 3965377 ~ 3976866 (+) False tecra
XM_026946069.2 mRNA downstream 219446 3965381 ~ 3976866 (+) True tecra
XM_034298635.1 mRNA downstream 221101 3967036 ~ 3976257 (+) False tecra
XR_004577078.1 other upstream 1350659 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1350665 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1350762 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1373061 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1421720 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 606587 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2593572 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2858722 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2965080 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4537025 8282960 ~ 8285204 (+) True G340208

Expression Profile