RNA id: TU399633


Basic Information

Item Value
RNA id TU399633
length 1592
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G337381
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3936171 ~ 4043189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACACGAAGTCGCTGTTGGCGATTTCGTCGTCTATGGTTCTGACAGCGTGAGAGAACGTCAGAATATCCCGCGAGAGGTTGTCGGTGTTTTTCTTCATCAGATGCaacttttcctcctcttcctcagccAGGAGAGCGATCCTGGCCAGCTGCTGTTTTTCCAGGAACTGTCTGATCTCAGCAAATTCCTCTCTGATCTGTTTCTCCGCCTGCTGCCTTTGGTTCTGTCCACATGGACAAGAGACATCACAAAAAACATATCGGGGagattttgtctttttcattcaTATGTTCTATTGATGATTTTTCTAATCAGTGGTTGTGTTTAAACCTCTTAAATTCCTGGGATGTGTCAGACTTTGGGGTGTTTAACGTAGAATTTGTGCTTAAAGTAGAGTTCGCTCTTTTGTTGGTCTTTGAACAAACCTGAAAAGCGTTTCTCGGCTGATTCATTTTGAATTGTCCAAGAATCCTTCAACATCACAAAACAAATCCTAGAAAGGTGTATAATTACTGTGCAAGCTATCCTTACATCACTGTATTTTGCCTAAAACGCCCTTAGAGATTCTGACAAACAGCAATTAAGATGCAAATTGCTGTTAATTAGTGGCAATTGTTTTGCTTTCTGTTCACAACCAGCTCTCACTGTGAAACCTGGCTTTAGTTAACATGTTTTGGTCTTCTCTTTGTTGTTACCTTGATGTGTACGGTGACGTCATCGCGCTCCTGCTTGGCCTCATAAAGCCGACGGAGACTTTTCTTCATCGGCACCAGCTCCTTCTTTAACTCCGCCTAAAGAACAGCGGAGAAACACAACTAAGCTTTATTAACTTTGAACCactagagcaaaaaaaaaaaaaaaaaaaaaaaccaagggGTGAAATGTAACAGCACGTACATTCGGACACGTATGAACACCTGATTATCTCAAGGAACTTGTGgggaaaaatgaatcattataAAGGAATAGACGTAAGGAATATGAAAACATGATAAACATGCTTTAAGGAGTCGCTGTAGTGTTACATCACATAAAGTGGTCCAGAACTGCACTGCGCATGCacaaggggtgtgtgtgtgtgtgtgtgtgtgtttacgagtgtgtgtttgggggaaGGAGTGTGAACACGGCGTGGCAGTGCAGTTCGTACAGTGTAACAGTGCAAAGTGAACGTCACAGTTTTAtaaagagtcagagagagagagagagagaGAGAGAGAGGTAAAGACAGGTTCTGTACATGATTCGCCatgtttaaaatgcataaaCCTTATTATACCAaatctgatcagtcagaaggtgttttattccttacttggtTTCTACTTAACGCTTATAAGCACATTATAAGCACAGACTATCTGCTCCATCTAGTTTCATTCCTTATTTGCAACATTAGCACTGTTTTAACCACCGCTGTGACAATGTGACGCAAGGGAACCGTGCTCCTCTTTTTCCACTTATTCCAGTATGACCCAACATGACCGTGACTCATCACGCTTACAACACCGATCAGAGGTTCCTCGCAGCGTTCCTGATATCACTGTAAAGTCTTTCACATGCTCTAAAATATGAAACTGCTCATTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399647 lncRNA upstream 130551 3804152 ~ 3805620 (+) True G337389
TU399613 lncRNA upstream 156958 3775686 ~ 3779213 (+) True G337365
XR_003404699.2 lncRNA upstream 165145 3769585 ~ 3771026 (+) True LOC113546270
TU399609 lncRNA upstream 165202 3769655 ~ 3770969 (+) False LOC113546270
TU399611 lncRNA upstream 173995 3759656 ~ 3762176 (+) True G337363
TU400439 lncRNA downstream 253548 4255557 ~ 4255899 (+) True G338057
TU400503 lncRNA downstream 266237 4268246 ~ 4268455 (+) True G338116
TU400553 lncRNA downstream 314541 4316550 ~ 4319101 (+) False rsad1
TU400554 lncRNA downstream 324043 4326052 ~ 4326495 (+) True G338147
TU400579 lncRNA downstream 337195 4339204 ~ 4370211 (+) True G338164
XM_026946051.2 mRNA upstream 6917 3825959 ~ 3929254 (+) True LOC113546282
XM_026945969.2 mRNA upstream 114869 3811626 ~ 3821302 (+) True qtrt1
XM_034298524.1 mRNA upstream 204007 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA upstream 204007 3724863 ~ 3732164 (+) True tnfsf18
XM_034298525.1 mRNA upstream 205750 3724863 ~ 3730421 (+) False tnfsf18
XM_034298498.1 mRNA downstream 37810 4039819 ~ 4048530 (+) True crb3a
XM_026946014.2 mRNA downstream 59497 4061506 ~ 4067944 (+) True LOC113546255
XM_026946086.2 mRNA downstream 261830 4263839 ~ 4268179 (+) True zgc:103625
XM_034298715.1 mRNA downstream 305913 4307922 ~ 4325036 (+) True rsad1
XM_026945927.2 mRNA downstream 328159 4330168 ~ 4352491 (+) True epn3a
XR_004577078.1 other upstream 1543693 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1543699 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1543796 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1566095 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1614754 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 350513 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2337498 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2602648 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2709006 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4280951 8282960 ~ 8285204 (+) True G340208

Expression Profile