RNA id: TU399637


Basic Information

Item Value
RNA id TU399637
length 2918
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G337381
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3936171 ~ 4043189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCAAACTGACGTGTGGACTCGATGCACGAGAAGCTGATTGATGATATAACGAAGGTGAGAAGAcggagaggagaaggaggagatggAGTGGCACGTGACTCTGAACGTCTTTTccgttatttattatttttttttgagagaatgaagaggagacagagagagtgagtgtgccGGGAGAACCGTGCTAAACGATCACTTATTTATATTCTAGCTCTCGTTAGTGGTGCGTCTGAGCTTTTAGATCTTTGGTTGCTGGAAAACGCTGCTTTTCTTCAtcatgtgtgtaaaacactgcGGAGAAGAAGCACCTGGATATCTCGCACTAGCTCCAGAACTTTCCACACCGCATCAGGATACGAACGGCCCACAACCGATCCTGGATCAGCTTTACTTCTAGGAACACTGACTCAGGTACGTTCTCTGTCTTGTTGAAATTTGGAAATATTCTTCTCAAAGTATCCCTGCAGCCAAGCCCGGATAGAAACAGCGTGTACTTCAATAAGCGTCCATTTCTACTTCCAGCACGTGAGTATACAAAGCAGAACAGTGGAGCTGTTTCTTGTTTGGACAACCATTttatggcatttaaaaaaacaaaaaagaaaaaaagaaagaaagaaaaaaagaaaaaaaaagttggaggaaaaaaagctcTGTGGTGGTTGAATAAAGTGGCCTAAAAGCGAATTAACAGCGAAACAATAAactgaagcattttatttttaaggaagTGCTCTAAACCTACAATTTGTGATGCCCCATAAACTTCATCGAAAACTCAAGGAGAATGACAATCTCCGGTTGCTGGAATCAGTTCACTTGCAGCAGAATTGAGAAAACGCTACAGAGCATTTCCTCAAACATCTTTCTGtagactttttgttttgttcctgtTTGTTACACTAaacagtttgtttaaaaaaataatatgaatcaCATGACCGTCCTCAAAACAATCGTGAGCATCCGAACTGGCTGACGCAAAATTACACAAAGCAGAGATTAAAATAAGCAATATCGCACATGGTGGAGTGCTAAAGACAGTCACTGAGACATGTTCAGATTGTCTTCGTGTCGTACAGAATGATGGAGCAAGAGCCATTTTTCCTTCCACAGAGAGTCGTGTGAAAGATGAAGAGCTCTTGCTGAAAGTCCATCCTGCACACATACAGCCTTGTGACTTgaggggggggaaaaaagcagaatttattattaattctttaattaattctgCATTATTTgaatcataaatttaaaaaaaaaactttaagtaAAAACGAAATAGGAAGATAGAAAGAGAGCTCGACAGGGTTGCTCATGAAGTGAATATGAAGCCGTCTTTTAACCATCACTAAGAGGATGTAAAACATGCTGGTTGTGTCACACTGAGTGTAAAAACAACCATTGTTGCATTTTTGCAGCAGAAAATCTACTCAGCACGtataaacaagacaaaaacaacagaCGTCGTTTCTCTTTCTTCACTCCGGAGCgatttctttcacatttttttccctcatttcaGTAATGATTTACTTCATTAAGTTTCAAATATGTCAAACAGAAGCAGACATTAATGTCATGAGCTACAGTGTATTATATAACAGTATGCTACGAAAGTGATATTCAGGGAGCTCACGAGCACCGCAACAGGATAGCGTTCATCCGTCCGCCGAGAAAGCGCAGAGAGTTCCTATCCCAACAATgacacagccatccgtggctggGAGTGAGAGTGTAAAacaattggccatgctctctgggtgggaggggcatacactctctgtcctgtcaatcacagtgacactagccaatcatgagcaTCTGTGTGCtcaagtatgtggaagagggcagtcAGCTTCCTCCGTTATGCCGGCATGTGAAAGAGCACTGCTTAGAAAGATCTGTGATTTTTATGcgatacataaaaataaaactaggttagattatattatatatttcagaCAACATAGCGATATATGTGATATTGCCTAGCAACGGTCCTGACTagtttacacttttctggctcAGAAATTAGCAAAGCTTCCAGCTCGAACAAAACCACTAAAtccaagccccgccccttttatATAGCAAACCACGATGCTTTCAATGTTTCAGCAGAGAAGTGGAAGTCAGTCTGTCAGCTTgagggctttaaaaaaaacacctcatttGGTCTAAAAGCAATTCATTTTAGCTCTAATCCTGTGACAACTTTTTGGTTATCCAGAGGACTTTCATTACTAATAACTACTTACTAACGACTCCAAATGGCTGACGCTGACAATCCACATGGTAACCATGACGCGTTCACATATGCTGTCCATATGAATCGAACCCTGGTGCGCTTTCACCCCTcgtttggggggaaaaagaaaaaagttaagaCACAGAAGATGTAAATGTGGGACGAACAAGCAGGAGGGCCGCTTCCTGAACCGGCTCTGAGAACAAGAATGAGAATTATGTGATGATTTCCACactatgggaaaaaaatggctcCCCTCCCCTCCAACAAAACACCTGTTTGCCGTCTCGGTATTGCTTGGACAGATTTGGGACGGGAACactcaaaaaaacaaattaaaaaaattcaaaacaggGAACCAAGACAACAGAGcagagaatgtgtgtttgtgtgtgtgtgtgagagagggagagagagagagagaggggagaagCTGGCGAGGGAATGAcggtttattgctgctataccACAAGAAATATCAGGAACTTATTTGTCTCgtggacgttccataacataATATGTCAACATAAAATGAATCCACGTGTTCGACTTAGTTATCGTTAAAAAACTATATACCCGGTTAACATCAATTAACTATATTTAATAGGGATACTACtgaaaaatgttcagaaaatggtcaaaaaccGTCAGTTTTTGGATGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399631 lncRNA upstream 35626 3943725 ~ 3959629 (+) False G337381
TU399647 lncRNA upstream 189635 3804152 ~ 3805620 (+) True G337389
TU399613 lncRNA upstream 216042 3775686 ~ 3779213 (+) True G337365
XR_003404699.2 lncRNA upstream 224229 3769585 ~ 3771026 (+) True LOC113546270
TU399609 lncRNA upstream 224286 3769655 ~ 3770969 (+) False LOC113546270
TU400439 lncRNA downstream 252945 4255557 ~ 4255899 (+) True G338057
TU400503 lncRNA downstream 265634 4268246 ~ 4268455 (+) True G338116
TU400553 lncRNA downstream 313938 4316550 ~ 4319101 (+) False rsad1
TU400554 lncRNA downstream 323440 4326052 ~ 4326495 (+) True G338147
TU400579 lncRNA downstream 336592 4339204 ~ 4370211 (+) True G338164
XM_034298636.1 mRNA upstream 18389 3965377 ~ 3976866 (+) False tecra
XM_026946069.2 mRNA upstream 18389 3965381 ~ 3976866 (+) True tecra
XM_034298635.1 mRNA upstream 18998 3967036 ~ 3976257 (+) False tecra
XM_026946051.2 mRNA upstream 66001 3825959 ~ 3929254 (+) True LOC113546282
XM_026945969.2 mRNA upstream 173953 3811626 ~ 3821302 (+) True qtrt1
XM_034298498.1 mRNA downstream 37207 4039819 ~ 4048530 (+) True crb3a
XM_026946014.2 mRNA downstream 58894 4061506 ~ 4067944 (+) True LOC113546255
XM_026946086.2 mRNA downstream 261227 4263839 ~ 4268179 (+) True zgc:103625
XM_034298715.1 mRNA downstream 305310 4307922 ~ 4325036 (+) True rsad1
XM_026945927.2 mRNA downstream 327556 4330168 ~ 4352491 (+) True epn3a
XR_004577078.1 other upstream 1602777 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1602783 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1602880 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1625179 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1673838 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 349910 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2336895 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2602045 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2708403 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4280348 8282960 ~ 8285204 (+) True G340208

Expression Profile