Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU400439 |
| length | 343 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G338057 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 4255557 ~ 4255899 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU399638 | lncRNA | upstream | 212368 | 3995255 ~ 4043189 (+) | False | G337381 |
| TU399637 | lncRNA | upstream | 252945 | 3995255 ~ 4002612 (+) | True | G337381 |
| TU399633 | lncRNA | upstream | 253548 | 3936171 ~ 4002009 (+) | False | G337381 |
| TU399631 | lncRNA | upstream | 295928 | 3943725 ~ 3959629 (+) | False | G337381 |
| TU399647 | lncRNA | upstream | 449937 | 3804152 ~ 3805620 (+) | True | G337389 |
| TU400503 | lncRNA | downstream | 12347 | 4268246 ~ 4268455 (+) | True | G338116 |
| TU400553 | lncRNA | downstream | 60651 | 4316550 ~ 4319101 (+) | False | rsad1 |
| TU400554 | lncRNA | downstream | 70153 | 4326052 ~ 4326495 (+) | True | G338147 |
| TU400579 | lncRNA | downstream | 83305 | 4339204 ~ 4370211 (+) | True | G338164 |
| TU400686 | lncRNA | downstream | 360425 | 4616324 ~ 4620273 (+) | False | pbx4 |
| XM_026946014.2 | mRNA | upstream | 187613 | 4061506 ~ 4067944 (+) | True | LOC113546255 |
| XM_034298498.1 | mRNA | upstream | 207027 | 4039819 ~ 4048530 (+) | True | crb3a |
| XM_034298636.1 | mRNA | upstream | 278691 | 3965377 ~ 3976866 (+) | False | tecra |
| XM_026946069.2 | mRNA | upstream | 278691 | 3965381 ~ 3976866 (+) | True | tecra |
| XM_034298635.1 | mRNA | upstream | 279300 | 3967036 ~ 3976257 (+) | False | tecra |
| XM_026946086.2 | mRNA | downstream | 7940 | 4263839 ~ 4268179 (+) | True | zgc:103625 |
| XM_034298715.1 | mRNA | downstream | 52023 | 4307922 ~ 4325036 (+) | True | rsad1 |
| XM_026945927.2 | mRNA | downstream | 74269 | 4330168 ~ 4352491 (+) | True | epn3a |
| XM_026945929.2 | mRNA | downstream | 74269 | 4330168 ~ 4352491 (+) | False | epn3a |
| XM_026945930.2 | mRNA | downstream | 74269 | 4330168 ~ 4352491 (+) | False | epn3a |
| XR_004577078.1 | other | upstream | 1863079 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| XR_004577077.1 | other | upstream | 1863085 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| XR_004577079.1 | other | upstream | 1863182 | 2358128 ~ 2392375 (+) | False | LOC113546300 |
| TU399163 | other | upstream | 1885481 | 2358116 ~ 2370076 (+) | False | LOC113546300 |
| TU399169 | other | upstream | 1934140 | 2317025 ~ 2321417 (+) | False | LOC113546301 |
| TU400576 | other | downstream | 96623 | 4352522 ~ 4355029 (+) | True | G338163 |
| TU401842 | other | downstream | 2083608 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU401948 | other | downstream | 2348758 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 2455116 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 4027061 | 8282960 ~ 8285204 (+) | True | G340208 |
