RNA id: TU400576


Basic Information

Item Value
RNA id TU400576
length 2205
RNA type TUCP
GC content 0.45
exon number 3
gene id G338163
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4352522 ~ 4355029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGACCACTTGGATCATTTTCACAATACACAACACTCACAATAACAGATGTGCAGTCCCTGAAGTAGCTGGGCCATATAGGGCCCATGCAGCCTCCTAACTCTCTCACAGTcactctcctcttcctcagggTCAGATCGGTCAGGTTGGTGCCCACctgagcaacaacaacaacaacaacaaaaaaaagcaaccaCTTCGGCTATACGGTGCATCTTTTTGGATAACAAGCTTTTACAGTACagttacacactaacactcatctATTTCTAggcagtgtgttcattttcaTCTAGCTTTGCACAGCAAGGTGACGCAGCAAGTACCGTAGTCACCTCAGCGCACAGGTTTGCAGTTCAGATGAGTGTACATGTAAAGTAAATATTCCTGCTGTCAGAACAAATCTTGCAAACTGAATTTCTTAATAATTAagtatttgaaagaaaaaaaaatccacatatgAATGTTTTGCATGAAGCTATAAAATCACAGCCTGTTAACAAAATGATCATCAGTTAGTGTATGAAAATAGATTCATTGCCTAAATAAACATGTCACTTATGGTACACAATGCTGCTACGCAAGCTCCTGAACCACATTCtccatgtagtgtgtgtgtgtgtgtgtgtgttgaaaGGGCGGCACGGTGGCACCACAGTTCGATTTTTATCTTCGTGGAGCTTCAGATGTTTTCCTGTACCTGTCTTGGTTTCCTCTGGTTCTTCACTTTCCTCCCacgtccaaaaaaaaacatgccagtaggtgaactggtggatgggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaaggtgcCCTGCGATTGACTTGTGTCTTATCCggggtgtgttcctgcctcacacacactgttctcaggactgactccggatccaccatgacacCAGCCAGACTAAAGACCGACCTCCCTGAAGATCACTGAATGTTGTCTAGCCTTCGTCAGCGTCAGTGTCTGACCAAAGCCCTGTTGTTGTCCTGAGATTTTTGAGCAGCAACATTGAGGTGTTTAATAACTTCAGCACCACCACAGTACTGCAGTAGTGTTTTTACGATGTCCTGGTGTATGATCGGACGGTTTCAATTCTATTTCCAAACAAGTTCCTCCAGCGGTTCTCATACCTTCCGCATCCGGCTGTTACTACCACAAAAATTTCACAAGCCTGCTTCCTCTGGACTTGTCCTAAATCACACTACAGCAACCTTCATTTCTCAGCGCAGGGGATGTGACTGCACTGAAAACCTgctacactgcattacactgctATCTCCGCTGCCACTCCGAGCACCTTCGTAGCTTCATCATACACGAGAGCTGTATTACTGACCAGAAacacactatatagccaaaagtataggtacccctgaccatcatacccatatgtgcttgttgaacttcccattccagatttattctccctgtgtttgctattataatatcctccattcttctgcgaaggctttccactagattttagagtgtgtttgtggggatttgtgttcattcagctacaagagcattagtgagatcaggcgctgatgttggtgaggaggtctggggttcagtcggtgttcctgttcatctcaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttctacaccaaccttcacacaccatgtcttcatggagctcgctttgtgtacaggggcattactatgctggaacaggtttgcgcctcttagttccagtgaagggaaattgtaaagcaacagcatacaaagacattccagACAattgggtgtgatgttcaggtgtccacacacttttgacCATATGGTGTTTTGATTGAGGGACTGACAGATAACTGTATGCTGTATGGTGGTGGATCTGATAAAATGGACATCTGTTGCATATATTAATCTTCTCTCATAAACAGACAGCTCACCGTGGGCAGAGTAGAGGGAGGCTCTCCTAAATCAGCAGGCTCACTCCTCTGACACAGCTTTTGCAGTCGTTTTAGGAGCAGAGTCTTTCCCACGCCGGTCGCACCCAGTAACAAGCACATAACTGTCTCTCGAAGTGGCCTTGGATaataattcaaaacaaaacaaaacacaaaatatgtgCTGTTTTGGGATAAAGCGATAAATTATCTAGCCAGCTAGCGTGTTTTTTAGCGGCTGGTGGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400554 lncRNA upstream 26027 4326052 ~ 4326495 (+) True G338147
TU400553 lncRNA upstream 33421 4316550 ~ 4319101 (+) False rsad1
TU400503 lncRNA upstream 84067 4268246 ~ 4268455 (+) True G338116
TU400439 lncRNA upstream 96623 4255557 ~ 4255899 (+) True G338057
TU399638 lncRNA upstream 309333 3995255 ~ 4043189 (+) False G337381
TU400686 lncRNA downstream 261295 4616324 ~ 4620273 (+) False pbx4
TU400711 lncRNA downstream 322488 4677517 ~ 4679625 (+) True G338252
TU400706 lncRNA downstream 343403 4698432 ~ 4708744 (+) True brd4
TU400705 lncRNA downstream 363168 4718197 ~ 4731105 (+) True G338246
TU400720 lncRNA downstream 402825 4757854 ~ 4762602 (+) True LOC113546199
XM_026945927.2 mRNA upstream 31 4330168 ~ 4352491 (+) True epn3a
XM_026945929.2 mRNA upstream 31 4330168 ~ 4352491 (+) False epn3a
XM_026945930.2 mRNA upstream 31 4330168 ~ 4352491 (+) False epn3a
XM_026945931.2 mRNA upstream 31 4330168 ~ 4352491 (+) False epn3a
XM_026945933.2 mRNA upstream 31 4330168 ~ 4352491 (+) False epn3a
XM_034298491.1 mRNA downstream 3868 4358897 ~ 4368269 (+) True LOC113546181
XM_034298488.1 mRNA downstream 24130 4379159 ~ 4401024 (+) True LOC113546170
XM_026945923.2 mRNA downstream 24130 4379159 ~ 4401024 (+) False LOC113546170
XM_034298490.1 mRNA downstream 24130 4379159 ~ 4401024 (+) False LOC113546170
XM_034298489.1 mRNA downstream 29659 4384688 ~ 4401024 (+) False LOC113546170
XR_004577078.1 other upstream 1960044 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1960050 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1960147 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1982446 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 2031105 2317025 ~ 2321417 (+) False LOC113546301
TU401842 other downstream 1984478 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2249628 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2355986 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3927931 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4557899 8912928 ~ 8915844 (+) True sem1

Expression Profile