RNA id: TU400579


Basic Information

Item Value
RNA id TU400579
length 1563
lncRNA type read_through
GC content 0.35
exon number 2
gene id G338164
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4339204 ~ 4370211 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacatatatatatatatatatatatatataaaattctcTATAATTAGGAAATCTAATAAGAAATAGATATAAATGTATTGAtaattgtaaaacatttttttaaaaatttattgtAAACAATCTAGCCTCAATCGTGATCACTCTCATTATGAACTCATAGcacacaatataataaaaatttgtCTATAATtgtctataatataatataatatatatatgcatggTGTATGGTATGGCTTTTATCTAATTGGTTTATCTTTCAAGGCCTTcttttaataaagcattatttAGAGTCACATTAGGACCTTAAACGGTTCAATAAAGTGCTTTTTTAGGTTTGCttaggtgtttttttccccaggaaaTTACAGGCCTCTTGCTATTCCTGTTATTTTGCATATGGCTTGTACAAAGTgcttgtttcttgttttctgttCATTGCCAGACATGTGCAAGTTGGTTAACCCAACGGATACAAATCTGTGCTGTATTTTGTTATGCAATTAAGAAGGAGGAGAAAGTGAAGCTAGAATTGTCAGAGATAGCTGGGATTTGAAGCTGGAACAATGGACAGTTCTGTGAAAtccagggattttttttttttttttttaaatgaatttctgGTATAACCACAATACTATCCACTCCATTATCCCACAGCAGAATGGTTTTGTACATCACAGACACTATCTGCACATACACTTTGCcattttgtgtgaatttattacatttaattcagattatttgctataaaacaagttGGCCATGAACTATTTTAAcctagcccaatctggcaacccggtcATTAACTGTCTGTtgctttcttctccttctccactGAGATGTTCATAGAGCGAGCATGGGGCAAGAAAAGTCTTTTAGTCTGTTAGTGCTTGTTGctgttcccatttttgaccagtaggtgtaATAATAACTCCATGGAAGCTAAGTGAGCAAATGTGTGCACCTCCCCATGAttgcacaacatctagaaaggcaagcaaataaatggaaaattgGCTTATATCTTccaaataataacatttatggTGGGGATTGGTATTTCAAACTCTTTAAAGTGTATGCAGTTGTGAATCAGGACTTTATGGAGAATAATATTTGTTGAACGGCTGATATGAATGGTGGGGCTCTGCCCAGGCTGTCCCTATGGATGTGCCACAActgttcctgttatcgcttaccttatagcagctataaacagtcctccctcaccagcttttatttctctctctctctctctctctctctctctctcttggaggttagggggaaaaaaattcagcttatcaagttacagagaaaccgcaaagctgAAAACTTAGCTACAGACTATTACaacgcactgacactggagactccttccataaatatcagaattgagaattcaacagcactgataTGTCATGGGACCCTTGGCTGAGAGGATCAATGGTGTGCCATTAGATTTTTTGATATCCAGACACATTTCTTGTTGGAAATTATTGCAATATTAATTATCTTCCATtccaatttaataaataaaaatgacttcaaacattgTAA

Function

GO:

id name namespace
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400554 lncRNA upstream 12709 4326052 ~ 4326495 (+) True G338147
TU400553 lncRNA upstream 20103 4316550 ~ 4319101 (+) False rsad1
TU400503 lncRNA upstream 70749 4268246 ~ 4268455 (+) True G338116
TU400439 lncRNA upstream 83305 4255557 ~ 4255899 (+) True G338057
TU399638 lncRNA upstream 296015 3995255 ~ 4043189 (+) False G337381
TU400686 lncRNA downstream 246113 4616324 ~ 4620273 (+) False pbx4
TU400711 lncRNA downstream 307306 4677517 ~ 4679625 (+) True G338252
TU400706 lncRNA downstream 328221 4698432 ~ 4708744 (+) True brd4
TU400705 lncRNA downstream 347986 4718197 ~ 4731105 (+) True G338246
TU400720 lncRNA downstream 387643 4757854 ~ 4762602 (+) True LOC113546199
XM_034298715.1 mRNA upstream 14168 4307922 ~ 4325036 (+) True rsad1
XM_026946086.2 mRNA upstream 71025 4263839 ~ 4268179 (+) True zgc:103625
XM_026946014.2 mRNA upstream 271260 4061506 ~ 4067944 (+) True LOC113546255
XM_034298498.1 mRNA upstream 290674 4039819 ~ 4048530 (+) True crb3a
XM_034298635.1 mRNA upstream 362947 3967036 ~ 3976257 (+) False tecra
XM_034298488.1 mRNA downstream 8948 4379159 ~ 4401024 (+) True LOC113546170
XM_026945923.2 mRNA downstream 8948 4379159 ~ 4401024 (+) False LOC113546170
XM_034298490.1 mRNA downstream 8948 4379159 ~ 4401024 (+) False LOC113546170
XM_034298489.1 mRNA downstream 14477 4384688 ~ 4401024 (+) False LOC113546170
XM_026945937.2 mRNA downstream 37801 4408012 ~ 4415254 (+) True ptger1c
XR_004577078.1 other upstream 1946726 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1946732 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1946829 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1969128 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 2017787 2317025 ~ 2321417 (+) False LOC113546301
TU401842 other downstream 1969296 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2234446 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2340804 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3912749 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4542717 8912928 ~ 8915844 (+) True sem1

Expression Profile