RNA id: TU400686


Basic Information

Item Value
RNA id TU400686
length 2485
lncRNA type sense_over
GC content 0.39
exon number 2
gene id pbx4
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4616324 ~ 4668256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaGAACACTACACGAAGCATTAAGTGCGCTTAGACGTGGTTGGAGGGGAATAATAACATCATGAGTCCTAGTCTATTCATTTTTACGTTGTATTATATAAACAGTGTACTGCTTAGTATCACGAGGGATAATGTGGagaatctggcaaccctggcaGCCCCAGTGAAAGGGCTGAGCGAGTGTAGCAGAGCGAAAAGGCTTTTTCGGGGCAAGCAACCGACTGGCCACTTCGCCTGGATGGAGCTCGGCATGTTTACCGCGGTTCGCGTTACATTTTCcacttaaattttttattttttttaatgtttcatgtaCACACATTGTAGGAGCAACACATCAGCGCTAGCTTTAGCCCGCTCCGCTCTGCTCTGCTCGGCTAAGGCTGCATGATTTCTGTTGTGTTGCTGGCTAGTTTGGCTACAATGCTAGTTCGCTAGTTAGCtttgttgctaaaaaaaaaaaaaaaaaaaaaaaagcaaagtgagcttGCAGGAGGTAAAACCTGAGCTTTAAATTcaagtgttttaaaaattaattagtcAAACAAGCTTTTACTTTCTACAACCTCAACGGTGTCCTGTTTCTCTACGCTTTAACTTTCACCGCATCCAAGATCTCTGCTCAAGTACTCTACCTTTCCAGCTCACACCTACGCTGCATGAAACCGATGAGTTTTGTTTACATTCGTTCATATTTCACGTTAAGTGATGATGAAACGCGCTGATTAAATGACTCGCGTCAGCGTAAAGAAGTATCTGAGTAAAGAAATCAGGGTCTGAAAAGGGTTTAAGTAGCACCTGTGTCTTTGGTggtactttcttttctttttttttttctcttgaacaGTGTAAACGAGATCCTACACTTTTTTATAAAGGTGTCCTGTTAGATTATACAACATTGATGGTAAAAGGTAATATTTTCCAAAGCAATAAATACACTctcaggggggaaaaaaagagaagggtACTAAACTGCACCTTTCCTGTGTACCTTTAATATAtgtctttcacctggaaatgtggatatagtgcacctttaaaaacagatttaagcCACAGAATGAGTTTTAAGCTCTGGTAAAGATTTAGAGGTTCACGACACACACCTATGTCAGTAAAAGATGATAAactaaaggtactaaaggtGTTCGTGTGACAGTTCCACCTCAGCAACAAGGAATggcttgggttttttttttttttttttgggagagTGTACTATAATGGTTCCCCAGAGGAACAGACCGAAGAACCCTTCAGGGAACCGTTCTCTTTCCGAGAGCGTGCGGCCCAAGGTGCTCGTGATGTTCAGGTTTTATGTGTGGCTGAAGAGCGAACCTGGCTCTGTGATTAATACTTTACTGATCCCGTGAGAGAGttcagtttggaaaaaaaaaaggatttctctgcagttttttttgattgttttaaaaaaaaaaaaaaaaaaaaagcatttctgaaCCTTTTGTTCATTTCTGCACAGAACGTTtaagggacaaactgaagagcTCTTGGAttcaaatcctttttttttatttttaatatcctgTAAATAAATGCAGAGTCACAGATCTGCTAGTAAATGAGTTGTCTTTGGTTCTTGTTCAGGTCTGGGGGGAAAAAGAGTGGAATTGAAATCCCAGATCTGGAGACGTACAGAAATTCAGTACAGTACGAATATTCTGTAGCCGAAACTAAGACTTGAATCATTAAGGTCTGTTTTTGCCTTATTTGCCACATCAGCGCAGCTTCCCTAATGCATCTCCCATTTCACCCTTTCTGTTTTAATGATGCTGTTAATGACCTCTCGTATAATTAGTCAGAAATCTGAACAcggaaaggagaaaagaaaggtCTTGAGAGCCGTGTTTATTAGCTGGAGGgtacttaatgtttttttttcttttgtttttgtttcatgtgaattgagcagtgtgtgtttgggtgtcaGTTGGAGTGAAGGAGCCTGTAAAAAGTTAGTTTTTTCTCAGGGGAGGGCAATAcgacaaaaaatatcatatcacgatactcaGTGACATTTCTGCTATACACGATGTCTATCACGATAACTAGCCTAGATATATCTTAGCACAACAACCTTGGAATGTGTTTCCTTTCATGATTCTTCTATTTAAAGGTGTGGAatagctgtatttatttatttatttatttatttatttaaagtccttcttttgtacaaataacccagacgatatgtagaacatgataaaaacaacagatttaaGCCttggccttagcaaaagtgtattaaatCGCTGAGGAAATCAATTTGGAAAAGATTTCTGGTCTGGAAtgcttgtttctgttttgattcgcttcctgtcagtcattttatagacagtCTTCTCTACAGGATGCCGTAGGTCccaggggcggagcttcatgaacatgggcGGGAATATTGGAGTGGGCTTCAACCGTCGAATTCTCCAAACTGTTAGAGACCtgatcctgaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400579 lncRNA upstream 246113 4339204 ~ 4370211 (+) True G338164
TU400554 lncRNA upstream 289829 4326052 ~ 4326495 (+) True G338147
TU400553 lncRNA upstream 297223 4316550 ~ 4319101 (+) False rsad1
TU400503 lncRNA upstream 347869 4268246 ~ 4268455 (+) True G338116
TU400439 lncRNA upstream 360425 4255557 ~ 4255899 (+) True G338057
TU400711 lncRNA downstream 57244 4677517 ~ 4679625 (+) True G338252
TU400706 lncRNA downstream 78159 4698432 ~ 4708744 (+) True brd4
TU400705 lncRNA downstream 97924 4718197 ~ 4731105 (+) True G338246
TU400720 lncRNA downstream 137581 4757854 ~ 4762602 (+) True LOC113546199
TU400698 lncRNA downstream 141040 4761313 ~ 4780328 (+) False stxbp2
XM_026945952.2 mRNA upstream 4724 4599150 ~ 4611600 (+) False LOC113546190
XM_034298325.1 mRNA upstream 4724 4599235 ~ 4611600 (+) False LOC113546190
XM_034298326.1 mRNA upstream 4724 4599300 ~ 4611600 (+) True LOC113546190
XM_026946087.2 mRNA upstream 18891 4575616 ~ 4597433 (+) True atp13a1
XM_026946084.2 mRNA upstream 51043 4528819 ~ 4565281 (+) True lmx1al
XM_034298539.1 mRNA downstream 77984 4698257 ~ 4752669 (+) False brd4
XM_026946025.2 mRNA downstream 77984 4698257 ~ 4752669 (+) False brd4
XM_034298540.1 mRNA downstream 78219 4698492 ~ 4752669 (+) False brd4
XM_034298541.1 mRNA downstream 78702 4698975 ~ 4752669 (+) False brd4
XM_034298542.1 mRNA downstream 97267 4717540 ~ 4752669 (+) False brd4
TU400576 other upstream 261295 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2223846 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2223852 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2223949 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2246248 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1719234 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1984384 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2090742 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3662687 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4292655 8912928 ~ 8915844 (+) True sem1

Expression Profile