RNA id: XM_034298541.1


Basic Information

Item Value
RNA id XM_034298541.1
length 5585
RNA type mRNA
GC content 0.57
exon number 21
gene id brd4
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4698257 ~ 4752669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTAAACggccttttttaaaaagaatggcATCTTTTTACATTTGTGATTACGTTTCTATTCTGACGTTCAGCTCCAAAACCGTACTGTATACTACCGTACTAAACTAAATAGCATGGAGAATGTCAACACAGTTCATACGCCACAGCGTTCGTTCTtcgtagtacagtagtatgcagtcaggctgaatcccaaataacGACATGCTCCCTATTTGAGTGCACTACGTCCTCTGTTTCCGTGTATGCATTGTTTCTACGTCCTTCCTAGTGCCCTAGGTGTCCATTTGTGATTCCGCCACCCCTGCCGTGTCAAACCGTAGCCGGTCAAGCTAACGTTAGTTAGCTCGGCGAAAAAATAAGTACAGCGCAGACGTTATTGCCGCTTTTTTGTTgccttgttattattattgatgttttAACTGCGTTTTGTGTTGGCGTATGATTAAATATAGAACACAAATATTAAGTATCTATGTACGCCGTTGACCACAAGTGCTGCTAACTGGGCGCTTGAGAATAAGGACTCCGAGGCTGTAACGCAGTGGTCGCCATTTTGTGCGCTACCCGGAGgaccggagagagagagagagaataacgTTTTCAGTTTAATAGGCGGAAATATCATTAGTAGTGATCTCCTGATCGGGCGTGTGTGAGATCATCCACTCGTCCTCCCTCCGATCGGCTGACGTTTCTCTGGTTGTGGACGAGAGCAGCTCCTCTGCTGAGTGCTGCTGGGGGATCATGAGCGCACTCAGATAGGGAGGGGAGGGACTCCTGACCTAAGCATGAACCTATAAATGGATTACAAGATGCATTCCAAGTCCAATGATTTGCTGGATTTTCAGACACTGGATGCCCTTTTGGAAAAAATTGCACATTATTCAGCAGCTGTAAAaagAGATCCCAGCGAGGAGTGCAATGGAATCGGCGGCACTCTCCCTGCAGAGGCCGCGCCCGGCTCGAGGCTGAACGAGTGGTGTCCCGTggcccctcctcctcctcctccacctccacctgccCCGGTGCCTGTGCTCCATCCAACCAGTATGGGTGACGGTCTGGACGCCGCACCGATGTCagggagcagcagcagcagtcagGGGCAGCCCCAGCCCCAGTCTCAACCCGCTCATACCTTCAACCCCCCTCCCCCAGAGGTCGCCAATTCATCACGGCCAAAGCGCCAGACCAACCAGCTGCAATATCTGCTCAAGGTGGTGCTCAAGACACTGTGGAAGCACCAGTTCTCATGGCCCTTCCAGGCTCCCGTAGATGCCGTCAAGCTTAACCTGCCTGACTATTACAAGATAATTAAAAACCCTATGGACATGGGAACAATCAAGAAACGGCTTGAGAACAGTTACTACTGGAACGCCCAAGAATGTATTCAAGATTTCAACACCATGTTTACCAACTGCTACATCTACAATAAGGCAGGGGATGACATAGTCTTAATGGCCGAGGCACTGGAGAAACTGTTCCTCCAGAAAATTTCGGAAATGCCTCAGGAGGAGAACGAGATTGCAGTCATGACTCCCAAGGGCCGTGGTCGGGGCAGGAGGGACCCAGGGTTGAGCTTGAAGCCCCCCGGACCCGGCTTGGATTCTCCGTCGACAACCCCTCAGACTCGTGGCATTTCCAATCACGGACCAGGGCCACAGACTAGAGGACCCGTACCAGGTCCTCCAGCTCTCCCTCCGCAGGTGGTTCTGCAGCAAGCTCTACCCCCTCGAGTTCCCCCTACGATCCCTCAGCTGGCTCCGCCCTTTCCACTCGGCCCTTCAGACTGCAACCCTCCGAGCACCATCATGACCTCGGTGCCTCCCCCGACCCAGACTGCCCTTCCTCCCATGCCCATTCAACAGAGTCCTGCACCGATGCTTCAGAGCGTCATGCCTAAAGTGAGTCCTCAGAGAATAAAGAGAAAAAGCCAGAAGAGGAAAGCAGACACGACGACCCCCACCGCCAACGACCAGCTGAGCGAGTCCTCTCCTGCCGAGTCCAAGTCGGGAAAGACTCTCCCTCGGCGAGAGAGCGTACGGCCGTCTAAACAGCCCAAGAAAGAAGCGCCGGATTCCCAGCACCACCTCGGCTACAGCGCGCCCGCTGGCCCCAACAGCCCCAAACTGCTGGAGCAGCTGCGCTACTGCGCCGGCATTGTGAAGGAGATGTTCGCTAAGAAGCACGCCGCTTACGCATGGCCTTTCTACAAACCGGTGGATGTGGAGACTCTGGGACTGCATGACTaccatgacatcatcaaacaccCCATGGACCTCACCACCATCAAGGAGAAGTTGGACAGCAGACAGTACAGAGACGCGCAGGAGTTTGCTGCAGACGTGCGGTTAATGTTCTCTAACTGCTACAAGTACAACCCTCCAGATCACGAGGTTGTGGTGATGGCACGCAAGCTGCAGGACGTGTTTGAGATGCGGTTTGCTAAGATGCCGGATGAGGCCGAGGAGGTCTTTACCCCTGCTCCTGCCGCCGTGCTGCATCCTGCGGCCCCTGTGAAGCCCCAGCCGCCCATCGCCGCCGCCTCGTCCTCCGACAGCTCCAGCGACTCCTCGTCCGAGTCGGAATCCTCCACCGATGATTCAGAGGAGGAGAGAGCTCAGAGGCTGGCGGAGCTCAAGGAGCAGCTCAAGGCGGTCCACGAGCAGCTGGCAGCCCTGTCTCAGCCCCAGACCAGCAAAccaaagaagaaagagaaggacaagaaggaaaagaagaaggacAAGCACAAAAAGAAAGCCATCCCAGGACTGGACGAGATCCTCGAGCCTCCTCCTGCTCTCCCAACGTCGAAGagcaagaacaagaacaacaaagATCCTCAGCCCAAGAAGACCAAGAAGCCAAGTAAGAAGGAGGGCATAAAGAACAACCGCTCCATTCCTCCCCCTGGCACCGCACCTCCCACCTTGCAGCCTGTGCCTGGCCTCGACCCTGTGGAAGAGCTGACTCTGGGAGGGGCGCCAGGATCCGCAGGCTTGGTGACTGCTGAGAAGTGTAAGCCCATGTCCTATGAGGAGAAGAGGCAGCTGAGCCTCGACATCAATAAGCTGCCAGGGGACAAGCTGGGACGCGTGGTCCACATCATTCAATCCCGCGAACCTTCGCTCAAAAACTCTAACCCAGACGAGATCGAGATCGACTTTGAGACGCTAAAACCTTCCACACTGCGGGAGCTGGAGAGATATGTTTCATCCTGTCTCCGCAAGAAGAAGAAACCTCCAGAAAAGACCATGGAGACTAAGCCGAAAGGCTCGTCTTCAGACTCGGGGAGCAGCAGTGAGTCGAGCTCGTCTGACAGCGAAGACTCGGAGTCAGGAATGGCCTCTAAATTGAAGAAGAGAGGTCACTCTGCTAAAGAGGGGAAGAAAGGCCACCACCCGGTGATAGCGCCAGGTATCGTCCAGCCCCCGATGCCCCTCCAGCCCCAGGCTCCGGTCTTACAGCCCACTGCTCagctaaaacaacaacaacaacaacagcagcagcagcagcagcagcaacagcagcagcagcagcatccgTCTCCTGCAGCGTACATGGCTCCTCCGGTCACGGGGCTGGAGTCGTCCCAGATGCTCGAGAACACGTATGACTCTTTGCCACACTTCGGACAGCCCCTCATGCACATGCCCCACCACGCCAATGACTCGTCCTCTCCTGCCCCGCCTCACCTCAACGCTCACACAGCAAGTGGCCCTGGGTCACCTGACACGCACCCCTTCTTAAACCAGCACCCCATCCTCCCATCCCCAGcactgcacaACGCTATGCCTCAGCAGCCTTCACGTCCCAGCAACAGAGCAGCGCCGCTCCCCGCCAAACCTCCACAGCCCACGCCTCCCCAGCAGCCCCTGCAGCTCCAGCCCCAGCAGCCCCCTCAACCCCCGCAGCACATCTCTCACCACCTCCTGCACCCCCCTCAGCCCATCCGCCAAAGGCCGCTGTCCCCTCCTACGCTCACCCCGCAGGGCCTGCTCTCCTCACAGCCTCCTCAGTTGCTGCTGGAGGATGACGAGGAGCCAGTGCCCACCATGCCCCTCAACCAGGTCCTGTACCTGCAGCACCTGCAGCAGGGTcgacaacaacagcaacaacagcaacagcagcagcagcagcaggtccCGCTCATGCAGACTCTCCAGGGCCGTCAGTCACAGCCACAGAGCCAGGCTTCCCTGCTGCAGACGGTGCAGGTGCAGTCACAGCTGCCTGTGCAGACGCAGCTGCCTGTCCCAACTCAGCCCCAGGCTGCTCCAGCGCACCAGCCCTCGCCGCAGATGCCCCAGCACGCACCCAGACACATGCAGCAATCGCagagccagcagcagcagcaacaacagcagcagcagcagctggctTTCTCACAAGGCCCAGTGCAGACCACGCAGACGCAGCCAGCGCAGCACAAGGTGGCCATGACTCCCAATAAAGCGCAGCAGCAGATTATTCAGCAACAGCAGCATCCTTCTCCACGTCAACACAAACCTGATCCCTACAGCGCAGGGCACCTGAGGGAGAACCCTTCTCCTCTTATGATGCATTCCCCTCAGATTTCCCAGTATCCTCCTGTAGTCCATCCGTCTCCTCCACAAAACCTCCAGCCCAAAAAGGAGCCGCAGCGAGGGCCACCAGCTCTCGGGCCACTGAAGGAGGAGAAGCAGCCGCCTTCACCTGTGATGAGGAGCGAGTCCTTCAGCCCGCCCATACGACAGGAACCACACAAACAACCTGAGAGCAAGACACACATGCCAGGCCATGGCCAGCAGAGGCCAGACATGAAGCCTTTGGACACTTCTCGCCCCGTAATCCGCTCCTCAGACCAGAGCGGTCCACCGCCCACCATGCCGGACAAGGACAAGTTCAAACAGGAGCCCAAGACTCCTGTGGCTCCTAAAAAGGTACAGGATGTGAAGCTGAAGAACATGGGCTCGTGGGCCAGCCTGGCGCAGAGGTCCACATCTACGCCGTCCTCCGCCGTGAAATCGAGCAGCGACAGCTTCGAGCAGTTCCGCCGTGCAGCCcgggagaaggaggagagggagaaagcgCTGAAGGCTCAGGCCGAGCAGGCTGAGAAGGACCGGCTGCGCAGAGAGCAGGAGAAACAGCGggGTCGTGATGATGAAGATTCGATGGAGGTGGCTCGAAGGCCCCATGAGGAGCAGCGGAGGCGCTCGGAGCACCAGCAGGCCCAGGCTCCTCCGCCACAACAGCAGCACCAGGCCCCGTCCCAAACACCGAACCAACAGCCCCAGACGCCGTCCGCCACGCAGCCATCACAGGCTCCCCCTCAGTCTCCGGCCTCCAGCCAGAGCGCCCTTGACCAGCAGAGAGAGATAGCACGCCGCCGCGAgcaagagaggaggaggagagaggcgATGGCAGCTACCATTGACATGAATTTCCAAAGTGATCTGATGGCTATCTTCGAGGAGAACTTGTTTTGAAATGCACGAGGAGGCACGAGagactgcaaaaaaaacaaaacaaaaacaaaacaaaaccgaTAACGGATTCCTCTGCATAGAGAAAAACGGACTGATGAAGCAGTAagggaattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400711 lncRNA upstream 19350 4677517 ~ 4679625 (+) True G338252
TU400686 lncRNA upstream 78702 4616324 ~ 4620273 (+) False pbx4
TU400579 lncRNA upstream 328764 4339204 ~ 4370211 (+) True G338164
TU400554 lncRNA upstream 372480 4326052 ~ 4326495 (+) True G338147
TU400553 lncRNA upstream 379874 4316550 ~ 4319101 (+) False rsad1
TU400720 lncRNA downstream 5185 4757854 ~ 4762602 (+) True LOC113546199
TU400698 lncRNA downstream 8644 4761313 ~ 4780328 (+) False stxbp2
TU401186 lncRNA downstream 488656 5241325 ~ 5241584 (+) True G338658
XR_004577050.1 lncRNA downstream 624537 5377206 ~ 5386152 (+) True LOC117595846
TU401215 lncRNA downstream 635319 5387988 ~ 5392192 (+) True G338683
XM_034298332.1 mRNA upstream 30719 4616462 ~ 4668256 (+) True pbx4
XM_034298333.1 mRNA upstream 30719 4616466 ~ 4668256 (+) False pbx4
XM_026945952.2 mRNA upstream 87375 4599150 ~ 4611600 (+) False LOC113546190
XM_026945962.2 mRNA downstream 5145 4757814 ~ 4762234 (+) False LOC113546199
XM_026946033.2 mRNA downstream 10509 4763178 ~ 4780386 (+) False stxbp2
XM_026946032.2 mRNA downstream 10510 4763179 ~ 4780386 (+) True stxbp2
XM_026946031.2 mRNA downstream 28622 4781291 ~ 4794558 (+) True xab2
XM_026946016.2 mRNA downstream 45672 4798341 ~ 4840522 (+) True camsap3
TU400576 other upstream 343946 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2306497 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2306503 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2306600 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2328899 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1586838 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1851988 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1958346 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3530291 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4160259 8912928 ~ 8915844 (+) True sem1

Expression Profile