RNA id: TU400720


Basic Information

Item Value
RNA id TU400720
length 1426
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC113546199
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4757814 ~ 4762602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAACAACCCGGAAGTTGTAAATGTTGAGTGCTTAGGTGACCCTCAGCGGTGAGAAAACATGGGAgtgaaaatagaaatatttcgGATGATGGTGTATCTGTCCTTTCCGGTGGCCATGTTTTGGATTTCCAACCAGGCAGAATACTTCGAGGAGTACATTGTGAAGAGAAAGaGAGAGATTTTTCCACCAGATGAGAAAATGCAGaGGAAAGAGCTCGAGGAGTTTAAGGAGCGCATGAGAATCAGGAAAGAGCAGAAGATGCTGAAACAGTTGGCCATGGAGACCGAAGACTGATCACGAGAGAAGGACCGAACGTCTCAGTTTCGCTGATCTAAAGACCAAAGCGAtgctccagagagagagagtgagagagagagacagactgtgtCGAGGGTTAAACGTGCTGAGGCATGTACATGGAGTGTATTTTGTGAAAAGACAGAGGAAATGTACAGTTTTGTAAATATAAGTGCATTCATAATATTGAATCAGTGCAAATTCTGAGGTTTGAACATCAGAACATTCAGCATTTTAAGACTCTGTCCTGTTTGCTGGGTAAtgggttatttattttttaaaataaaaaatacattgatttttttccttcttaacATCTTTGCACcatgttcattttcattcatgtgTGTTCACTTACTGTATAATGAATTGGATAAAAGCTTCAGAGAATATCTGACCTGGAGTTTGTAGATTTGTagctaagagctgctgctgtaatcataaagactctcctgtgctcatcccaggattcACAGTCTGCtcatcttttcaacacactcagtactttttgtctttactcttctgtacttgtacagtgtaatgatttataatccctcTATCCGCGGTCAtggagaagaggatgagttccctttcgAGTCTGGATCCTCTCCAGGTTTTCTCTTCGTGTCATCATCATTGCCACACTCACCTCGGTTTTGTTCATTAGAGATTTAACCTACATCCACaattctataaagctgctttatgagaATTTCTATTCTTAAGactgctgtacaaataaaatggaaatgtatttaTACAGGTTTGTATGTGACTGTGCAGAATGAACCAAGCTCCAATGCAGTTTCCAGACTATGTATAAATATCTGAAGTGAATTTAAATTCAAAGAATGTGGAGACGCATAAAGGATTGATAACCATAAGATCCTGGAtattaaggctgttttttttgtgctacaGTGGACTATGGTAgctaaaaaggacaaaaaataaataaaattagaaagtGTGTAGTCAGTGTATGCTAGTGCACTGACATATAGACGTGTTACTAGATCACTGTTTCTCAGATAGAGTACGCACATCCTGGGGTACCTGGAGATACTACAGTATGTTCATTAACTTTATTCTGATGATATTCAGATTATTACTGTTTACCACAGca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400705 lncRNA upstream 26749 4718197 ~ 4731105 (+) True G338246
TU400706 lncRNA upstream 49110 4698432 ~ 4708744 (+) True brd4
TU400711 lncRNA upstream 78229 4677517 ~ 4679625 (+) True G338252
TU400686 lncRNA upstream 137581 4616324 ~ 4620273 (+) False pbx4
TU400579 lncRNA upstream 387643 4339204 ~ 4370211 (+) True G338164
TU401186 lncRNA downstream 478723 5241325 ~ 5241584 (+) True G338658
XR_004577050.1 lncRNA downstream 614604 5377206 ~ 5386152 (+) True LOC117595846
TU401215 lncRNA downstream 625386 5387988 ~ 5392192 (+) True G338683
TU401337 lncRNA downstream 669247 5431849 ~ 5432264 (+) True G338799
TU401352 lncRNA downstream 762438 5525040 ~ 5526609 (+) True G338814
XM_034298539.1 mRNA upstream 5185 4698257 ~ 4752669 (+) False brd4
XM_026946025.2 mRNA upstream 5185 4698257 ~ 4752669 (+) False brd4
XM_034298540.1 mRNA upstream 5185 4698492 ~ 4752669 (+) False brd4
XM_034298541.1 mRNA upstream 5185 4698975 ~ 4752669 (+) False brd4
XM_034298542.1 mRNA upstream 5185 4717540 ~ 4752669 (+) False brd4
XM_026946033.2 mRNA downstream 576 4763178 ~ 4780386 (+) False stxbp2
XM_026946032.2 mRNA downstream 577 4763179 ~ 4780386 (+) True stxbp2
XM_026946031.2 mRNA downstream 18689 4781291 ~ 4794558 (+) True xab2
XM_026946016.2 mRNA downstream 35739 4798341 ~ 4840522 (+) True camsap3
XM_026946017.2 mRNA downstream 35739 4798341 ~ 4840522 (+) False camsap3
TU400576 other upstream 402825 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2365376 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2365382 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2365479 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2387778 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1576905 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1842055 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1948413 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3520358 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4150326 8912928 ~ 8915844 (+) True sem1

Expression Profile