RNA id: TU401186


Basic Information

Item Value
RNA id TU401186
length 200
lncRNA type intronic
GC content 0.51
exon number 2
gene id G338658
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5241325 ~ 5241584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGGTGCAGACTCAGGTACAGCTTGAACCACATGTGATGGCATTAtttagtcagcacagtggtgcagcaggtagtgttgcaacctcacagctccaggtttgCCAGGGTCACTCGTttctgagctcgggttactgtctgtgtagtgtttcacatgttctcccagtgtccacGTGGGTTTTCTTggagttctccagtttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400698 lncRNA upstream 460997 4761313 ~ 4780328 (+) False stxbp2
TU400720 lncRNA upstream 478723 4757854 ~ 4762602 (+) True LOC113546199
TU400705 lncRNA upstream 510220 4718197 ~ 4731105 (+) True G338246
TU400706 lncRNA upstream 532581 4698432 ~ 4708744 (+) True brd4
TU400711 lncRNA upstream 561700 4677517 ~ 4679625 (+) True G338252
XR_004577050.1 lncRNA downstream 135622 5377206 ~ 5386152 (+) True LOC117595846
TU401215 lncRNA downstream 146404 5387988 ~ 5392192 (+) True G338683
TU401337 lncRNA downstream 190265 5431849 ~ 5432264 (+) True G338799
TU401352 lncRNA downstream 283456 5525040 ~ 5526609 (+) True G338814
TU401392 lncRNA downstream 485594 5727178 ~ 5728306 (+) True G338842
XM_034298550.1 mRNA upstream 145052 5014830 ~ 5096273 (+) True col5a3a
XM_034298521.1 mRNA upstream 353980 4878316 ~ 4887345 (+) False LOC113546287
XM_034298522.1 mRNA upstream 359450 4877395 ~ 4881875 (+) False LOC113546287
XM_026946059.2 mRNA upstream 359450 4878316 ~ 4881875 (+) True LOC113546287
XM_026946016.2 mRNA upstream 400803 4798341 ~ 4840522 (+) True camsap3
XM_026929816.2 mRNA downstream 205409 5446993 ~ 5455237 (+) True ppan
XM_034298494.1 mRNA downstream 221471 5463055 ~ 5467361 (+) True LOC113536209
XM_034298495.1 mRNA downstream 221471 5463055 ~ 5467361 (+) False LOC113536209
XM_034298650.1 mRNA downstream 228978 5470562 ~ 5472111 (+) True LOC113536250
XM_034298492.1 mRNA downstream 232358 5473942 ~ 5511202 (+) False LOC113536275
TU400576 other upstream 886296 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2848847 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2848853 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2848950 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2871249 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1097923 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1363073 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1469431 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3041376 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3671344 8912928 ~ 8915844 (+) True sem1

Expression Profile