RNA id: TU401337


Basic Information

Item Value
RNA id TU401337
length 416
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G338799
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5431849 ~ 5432264 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaccccagtgacccagttccattggcagccaaacatgcccatgccataacactgcctccacatgtttgacggatgatgtggtatgctttggatcatgagcccttcctttccttctccatacttttctcttcccatcattctggtacaagttaatcttgcatcagaactggtcaggcttttttttagaggttttttagcaaagtctaatctggcgtttgtgttcttgagtgttaccagcggtttgcatcttgaggtaaaccgtctgtatttacattcatgaaggtggctcttgattgtagactttgacaatgataggcctacctcctccagagtgttcctgacttggctagatgttgtgaaggggttgttcttcaataagaaaagaattctgcaatcatccactttagttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401215 lncRNA upstream 39657 5387988 ~ 5392192 (+) True G338683
XR_004577050.1 lncRNA upstream 45697 5377206 ~ 5386152 (+) True LOC117595846
TU401186 lncRNA upstream 190265 5241325 ~ 5241584 (+) True G338658
TU400698 lncRNA upstream 651521 4761313 ~ 4780328 (+) False stxbp2
TU400720 lncRNA upstream 669247 4757854 ~ 4762602 (+) True LOC113546199
TU401352 lncRNA downstream 92776 5525040 ~ 5526609 (+) True G338814
TU401392 lncRNA downstream 294914 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA downstream 294914 5727178 ~ 5728022 (+) False G338842
TU401536 lncRNA downstream 422394 5854658 ~ 5855430 (+) True G338961
XR_003403669.2 lncRNA downstream 543608 5975872 ~ 5981732 (+) True LOC113536203
XM_026945958.2 mRNA upstream 177586 5143226 ~ 5254263 (+) True olfm2a
XM_026945957.2 mRNA upstream 177586 5206144 ~ 5254263 (+) False olfm2a
XM_026945959.2 mRNA upstream 177586 5211366 ~ 5254263 (+) False olfm2a
XM_034298550.1 mRNA upstream 335576 5014830 ~ 5096273 (+) True col5a3a
XM_026946059.2 mRNA upstream 549974 4878316 ~ 4881875 (+) True LOC113546287
XM_026929816.2 mRNA downstream 14729 5446993 ~ 5455237 (+) True ppan
XM_034298494.1 mRNA downstream 30791 5463055 ~ 5467361 (+) True LOC113536209
XM_034298495.1 mRNA downstream 30791 5463055 ~ 5467361 (+) False LOC113536209
XM_034298650.1 mRNA downstream 38298 5470562 ~ 5472111 (+) True LOC113536250
XM_034298492.1 mRNA downstream 41678 5473942 ~ 5511202 (+) False LOC113536275
TU400576 other upstream 1076820 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3039371 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3039377 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3039474 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3061773 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 907243 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1172393 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1278751 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2850696 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3480664 8912928 ~ 8915844 (+) True sem1

Expression Profile