Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU401352 |
| length | 674 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 3 |
| gene id | G338814 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 5525040 ~ 5526609 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU401337 | lncRNA | upstream | 92776 | 5431849 ~ 5432264 (+) | True | G338799 |
| TU401215 | lncRNA | upstream | 132848 | 5387988 ~ 5392192 (+) | True | G338683 |
| XR_004577050.1 | lncRNA | upstream | 138888 | 5377206 ~ 5386152 (+) | True | LOC117595846 |
| TU401186 | lncRNA | upstream | 283456 | 5241325 ~ 5241584 (+) | True | G338658 |
| TU400698 | lncRNA | upstream | 744712 | 4761313 ~ 4780328 (+) | False | stxbp2 |
| TU401392 | lncRNA | downstream | 200569 | 5727178 ~ 5728306 (+) | True | G338842 |
| TU401393 | lncRNA | downstream | 200569 | 5727178 ~ 5728022 (+) | False | G338842 |
| TU401536 | lncRNA | downstream | 328049 | 5854658 ~ 5855430 (+) | True | G338961 |
| XR_003403669.2 | lncRNA | downstream | 449263 | 5975872 ~ 5981732 (+) | True | LOC113536203 |
| TU401647 | lncRNA | downstream | 461202 | 5987811 ~ 5988492 (+) | True | G339055 |
| XM_026929400.2 | mRNA | upstream | 4493 | 5513096 ~ 5520547 (+) | True | eif3g |
| XM_034298492.1 | mRNA | upstream | 13838 | 5473942 ~ 5511202 (+) | False | LOC113536275 |
| XM_034298493.1 | mRNA | upstream | 13838 | 5477713 ~ 5511202 (+) | True | LOC113536275 |
| XM_026929473.2 | mRNA | upstream | 13838 | 5502234 ~ 5511202 (+) | True | LOC113535910 |
| XM_026929474.2 | mRNA | upstream | 13838 | 5508288 ~ 5511202 (+) | False | LOC113535910 |
| XM_026929637.2 | mRNA | downstream | 105718 | 5632327 ~ 5658199 (+) | True | LOC113535991 |
| XM_034298515.1 | mRNA | downstream | 105718 | 5632327 ~ 5658197 (+) | False | LOC113535991 |
| XM_026929638.2 | mRNA | downstream | 105720 | 5632329 ~ 5655195 (+) | False | LOC113535991 |
| XM_026929640.2 | mRNA | downstream | 105725 | 5632334 ~ 5648898 (+) | False | LOC113535991 |
| XM_026929494.2 | mRNA | downstream | 138563 | 5665172 ~ 5669016 (+) | True | oxsm |
| TU400576 | other | upstream | 1170011 | 4352522 ~ 4355029 (+) | True | G338163 |
| XR_004577078.1 | other | upstream | 3132562 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| XR_004577077.1 | other | upstream | 3132568 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| XR_004577079.1 | other | upstream | 3132665 | 2358128 ~ 2392375 (+) | False | LOC113546300 |
| TU399163 | other | upstream | 3154964 | 2358116 ~ 2370076 (+) | False | LOC113546300 |
| TU401842 | other | downstream | 812898 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU401948 | other | downstream | 1078048 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 1184406 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 2756351 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU403493 | other | downstream | 3386319 | 8912928 ~ 8915844 (+) | True | sem1 |
