RNA id: TU401536


Basic Information

Item Value
RNA id TU401536
length 773
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G338961
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5854658 ~ 5855430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTTATTTAGGAAGAGAAACAAAATGCCCGGTGTCATTGTGCTTTTACATTGTTCAAACATtgggcaaaaataaataaataaataaaagaaacccCTAGACGGGGTGGAAAGAAATTTCAGAAATAAGGTCATTTGATGCTATAATACAGttttgtagaaatgtttaattccaAAGAATTATTTACAAGCAATAAACAGCTCCCTTTTTATTCACTTGTAATACAAAAGCAGAGGTTCAGCTAATACAAGGCCAGTCTACCTGAATCTCTAAAGTTTGTGctactatttattttagttattcttcaaacaaaataaaaaaaaaatgtcggAAGTGTTCTCAAAGAAGTGCTTTTTATAGCGGTCTTTCTGTCACGTGACACAGTGCACGTGAGCAGTGGAAGGTTACCCTCCGTGTGTCCGAAaccacaccctattcactatatagtgcactacttagggtgTTTGGCTGTTTCCAATTGAGTGTAGCACATCCGGAACACTcctgaaatcccacaatgctcTGCACTAGATTAGTGTCCCGAACCTAGGAGATGCAGGACGTCCATCACATAATGCACTTTGCAGTTCATTCTGTAGGggatagggaatagggagtagggaatagggagtaggctGTAGGGACTAGGGTGCCATTTCAGACACAGGGTTAGAAACGCCGCTCGACCCTCGTGCACCTGGGAAAAAAGGGTCTCGGCGGCACCACGTGACTACGACTCTACAACTACTCTACATAAGAGGCAGGCAGTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401392 lncRNA upstream 126352 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA upstream 126636 5727178 ~ 5728022 (+) False G338842
TU401352 lncRNA upstream 328049 5525040 ~ 5526609 (+) True G338814
TU401337 lncRNA upstream 422394 5431849 ~ 5432264 (+) True G338799
TU401215 lncRNA upstream 462466 5387988 ~ 5392192 (+) True G338683
XR_003403669.2 lncRNA downstream 120442 5975872 ~ 5981732 (+) True LOC113536203
TU401647 lncRNA downstream 132381 5987811 ~ 5988492 (+) True G339055
TU401728 lncRNA downstream 261319 6116749 ~ 6128284 (+) True G339126
TU401768 lncRNA downstream 318891 6174321 ~ 6175597 (+) True G339159
TU401777 lncRNA downstream 345063 6200493 ~ 6201623 (+) True G339167
XM_034298742.1 mRNA upstream 128263 5704672 ~ 5726395 (+) True zgc:63863
XM_034298744.1 mRNA upstream 133096 5704671 ~ 5721562 (+) False zgc:63863
XM_026929890.2 mRNA upstream 180467 5669693 ~ 5674191 (+) True cfap20
XM_026929889.2 mRNA upstream 181669 5669692 ~ 5672989 (+) False cfap20
XM_026929494.2 mRNA upstream 185642 5665172 ~ 5669016 (+) True oxsm
XM_026929973.2 mRNA downstream 72276 5927706 ~ 5944224 (+) True slc39a4
XM_026930094.2 mRNA downstream 245116 6100546 ~ 6109043 (+) True LOC113536255
XM_026930200.2 mRNA downstream 256671 6112101 ~ 6116707 (+) True LOC113536325
XM_026929397.2 mRNA downstream 332739 6188169 ~ 6197615 (+) True cdca7b
XM_026929989.2 mRNA downstream 417517 6272947 ~ 6275012 (+) True sp8a
TU400576 other upstream 1499629 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3462180 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3462186 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3462283 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3484582 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 484077 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 749227 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 855585 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2427530 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3057498 8912928 ~ 8915844 (+) True sem1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1629041 True 732 lncRNA 0.37 2 NC_048581.1 15495060 ~ 15495865 (-)
mexican tetra (Astyanax mexicanus) TU470857 False 3698 lncRNA 0.41 2 NW_019172948.1 381606 ~ 412167 (+)