Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU401842 |
| length | 929 |
| RNA type | TUCP |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC113535938 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 6333989 ~ 6343909 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577070.1 | lncRNA | upstream | 19733 | 6313485 ~ 6319774 (+) | True | LOC117595885 |
| TU401777 | lncRNA | upstream | 137884 | 6200493 ~ 6201623 (+) | True | G339167 |
| TU401768 | lncRNA | upstream | 163910 | 6174321 ~ 6175597 (+) | True | G339159 |
| TU401728 | lncRNA | upstream | 211223 | 6116749 ~ 6128284 (+) | True | G339126 |
| TU401647 | lncRNA | upstream | 351015 | 5987811 ~ 5988492 (+) | True | G339055 |
| TU401912 | lncRNA | downstream | 130611 | 6474482 ~ 6526317 (+) | True | G339275 |
| TU401913 | lncRNA | downstream | 130611 | 6474482 ~ 6526317 (+) | False | G339275 |
| XR_004577045.1 | lncRNA | downstream | 149766 | 6493637 ~ 6494246 (+) | True | LOC117595843 |
| TU401926 | lncRNA | downstream | 149783 | 6493654 ~ 6494234 (+) | False | LOC117595843 |
| XR_004577046.1 | lncRNA | downstream | 149859 | 6493730 ~ 6494246 (+) | False | LOC117595843 |
| XM_026929989.2 | mRNA | upstream | 64495 | 6272947 ~ 6275012 (+) | True | sp8a |
| XM_026929397.2 | mRNA | upstream | 141892 | 6188169 ~ 6197615 (+) | True | cdca7b |
| XM_026930200.2 | mRNA | upstream | 222800 | 6112101 ~ 6116707 (+) | True | LOC113536325 |
| XM_026930094.2 | mRNA | upstream | 230464 | 6100546 ~ 6109043 (+) | True | LOC113536255 |
| XM_026929973.2 | mRNA | upstream | 395283 | 5927706 ~ 5944224 (+) | True | slc39a4 |
| XM_026929374.2 | mRNA | downstream | 1600 | 6345471 ~ 6350729 (+) | True | polr1f |
| XM_026930087.2 | mRNA | downstream | 36289 | 6380160 ~ 6381337 (+) | True | LOC113536247 |
| XM_026929961.2 | mRNA | downstream | 40330 | 6384201 ~ 6385680 (+) | True | twist1a |
| XM_026929800.2 | mRNA | downstream | 133452 | 6477323 ~ 6524126 (+) | True | snx13 |
| XM_026929801.2 | mRNA | downstream | 136093 | 6479964 ~ 6523974 (+) | False | snx13 |
| TU400576 | other | upstream | 1984478 | 4352522 ~ 4355029 (+) | True | G338163 |
| XR_004577078.1 | other | upstream | 3947029 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| XR_004577077.1 | other | upstream | 3947035 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| XR_004577079.1 | other | upstream | 3947132 | 2358128 ~ 2392375 (+) | False | LOC113546300 |
| TU399163 | other | upstream | 3969431 | 2358116 ~ 2370076 (+) | False | LOC113546300 |
| TU401948 | other | downstream | 260786 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 367144 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 1939089 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU403493 | other | downstream | 2569057 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | downstream | 2569102 | 8912973 ~ 8915844 (+) | False | sem1 |
