RNA id: XM_026929528.2


Basic Information

Item Value
RNA id XM_026929528.2
length 1371
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC113535938
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6333989 ~ 6343909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTCCTCAGTGGAGCAGCGCGTGCACGGAGAAGGCGGCTTCATTTGGAGCAGAGATGCGCTCAGCGGTACTGTGTACAGGAGCTCTAGAGGAGTgatatacacacttacactctacAGGAGCTCTACATGAGTGATCTGCACACTCATACTCCATAGGAGGTCTACAGAAGTGAtctgcacactcacactctaCAGGACTTCTACAGGAGTGAGCGCAGAGTGAGTAGGGGAAGAAGTATGGATTAAGGAGGGCCAAGCCCGAAGCGGACCGCACTGCTCCGGAGCTGCGGGAAGGATGCCCGAGCGAGGATGTGCAGCAGCCGGAAGATCGTCTGCAGTCTGCTGGTGCTGTCCGTGCTGCAGGTGGGGCTCGGCGCGGCCAGCATCGCGCTCGGAGCCGTGGCCCTCAGCAGAGCGCGAAACGAGCACAAGACGCAGCAGGGTCATGCGTCCCCGGTGTGGAGCGGGGTGTGTTTCCTTGTCTGTGGGCTCTGTGGGATGCTGTGTGCGAGAAAAAGGACTGGTCTGGTTATGATCCTGTTCTCAGCGTGCTGCATTTGCGGCCTGATCGGAGGAATCCTGAACTTCCAGTTTGTGCGGGCACTGGTGAAGCGTCCTGACGCGGTGCGTTCGCTGCACATGGCCGCCATGTCTCTGGCCTGCCTGGGGATCAGCAGCTGCACCCTGTCCACGTGGCTGACGTGCCGGCTGGCCAGCAACGAGCAGCAGCGCATGTTCCTGGAGCGCGAACACTCGCTGCATCACTCGCACGAGATGGCTGAGAAGgaagtaatggATAACTCCAGCAATGGCATCCCACAAATCACATACAACGGTCGGAGCGCATCACCGTGACAAACTTGGGTCTCACTTTGATGACTTTGCACTCTCGTTAGGAATGATGTTACGGGGCTGATGGCCATCTGTAGGACATTTCCTGCACACAGCAGGCCCTAGGATACTTAATGCtactgtggcaaaaaaaaaaaggggagagaTGATCTCTGTGGATTGAGCACCAATCAGCATTCAGGGACGTGATGCCTCAGGAGTGTTCATTAGTGAGTACAGAGCATTGTATCAGTAAGCACAGAACATGCATGTAAACTTGACTTCCTTACTCTCTCATATTATCCCTCTCCCTTCCTTAATGCATTCCTCCTGCATCTCTCCATTATTCCTTCTGATTATGGGTTATGGGAATGATGAATCTGTCTCTGAATTTCTTATGTATGGCATATTGAATGCTCGGAcctcaaatatacaaaatgcacAATGTAAAATGCTTGAACAAGAgaataatttattgatttacagtatttttatataaaggcttcatataaaaatgaaataaaaagactGAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577070.1 lncRNA upstream 14215 6313485 ~ 6319774 (+) True LOC117595885
TU401777 lncRNA upstream 132366 6200493 ~ 6201623 (+) True G339167
TU401768 lncRNA upstream 158392 6174321 ~ 6175597 (+) True G339159
TU401728 lncRNA upstream 205705 6116749 ~ 6128284 (+) True G339126
TU401647 lncRNA upstream 345497 5987811 ~ 5988492 (+) True G339055
TU401912 lncRNA downstream 130573 6474482 ~ 6526317 (+) True G339275
TU401913 lncRNA downstream 130573 6474482 ~ 6526317 (+) False G339275
XR_004577045.1 lncRNA downstream 149728 6493637 ~ 6494246 (+) True LOC117595843
TU401926 lncRNA downstream 149745 6493654 ~ 6494234 (+) False LOC117595843
XR_004577046.1 lncRNA downstream 149821 6493730 ~ 6494246 (+) False LOC117595843
XM_026929989.2 mRNA upstream 58977 6272947 ~ 6275012 (+) True sp8a
XM_026929397.2 mRNA upstream 136374 6188169 ~ 6197615 (+) True cdca7b
XM_026930200.2 mRNA upstream 217282 6112101 ~ 6116707 (+) True LOC113536325
XM_026930094.2 mRNA upstream 224946 6100546 ~ 6109043 (+) True LOC113536255
XM_026929973.2 mRNA upstream 389765 5927706 ~ 5944224 (+) True slc39a4
XM_026929374.2 mRNA downstream 1562 6345471 ~ 6350729 (+) True polr1f
XM_026930087.2 mRNA downstream 36251 6380160 ~ 6381337 (+) True LOC113536247
XM_026929961.2 mRNA downstream 40292 6384201 ~ 6385680 (+) True twist1a
XM_026929800.2 mRNA downstream 133414 6477323 ~ 6524126 (+) True snx13
XM_026929801.2 mRNA downstream 136055 6479964 ~ 6523974 (+) False snx13
TU400576 other upstream 1978960 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3941511 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3941517 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3941614 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3963913 2358116 ~ 2370076 (+) False LOC113546300
TU401948 other downstream 260748 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 367106 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1939051 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2569019 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2569064 8912973 ~ 8915844 (+) False sem1

Expression Profile