RNA id: TU401912


Basic Information

Item Value
RNA id TU401912
length 2150
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G339275
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6474482 ~ 6526317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcacgcgTGTGCGCTTTGGATCACACACCCCAGCCCTCTCAGTCCTTCCTGTTCTTAAGAGAAGCACTGTATCCACACGGCTGTAGCGTAGAGGATTCATTTTAGCATTGTGGAGCGTCACCACTAAGATGCTGCAGTGCCTGACCTGTACCGTCAGCATTTCAGTATTTGTatctcattttgtctttttattattattattattattattaatgttgttattattattattattattattattttgggaGGAAGTTGCAATGTGGGATGATTCCCTGTGGATAAAACTTGTATTTGAGTTTTCAAAGGTCGTTGATGAGTCGACGTAAAGACGAAATGATTTTAAACAGTCTAGTGGACAATGGAAGGAGGGAAAACTGACAAACGTGGCTCGTGCTGAGCCGCTTTTTATCACAAGCATATCTGAGGAAAAGATTGTTTTTAGGGTCGGAAGGTGGGTTTTAATTGCACCATACGTCACGTTTTAGCGAGTGAAATCATGTCGAAACCATGTGAGTGATTTAATAACCAAATATACGTGCAGCACTGACACACAGGCCTTCTGATTGAAGAGCGTTAAAATAGCCGTCACATAACCTCCTGCGAGTCAGAGTGCATTTCATACAAAGAAGATTCAAGCaggacacgcacacacacacgtgcacacaaaagttttggcaccctgCAGGACTCCAAGCATACAGCACTATGCGTTAAAGAATGTATCTGTCTCTGGCAAACCTGTCTGTACTTGTTCTTCATATTTTTCCACagttaacacactgcacatacaGGATGTGTACATGTTTTGAACACTAGTAGACTTGTAAAGACCCGTGTGTAGCATTACGTTTAAGTCAGAAGCGTGTGCCAGTGCCAGTTAGGAAATCAGCCTTAATTCTCTACAACCAAACGAGACGTGTGCTTAGACGTAGCTTTCCTTAAACACATCCACACGTTTTCAGAGACACGTTAAAGATATTCGGACCTAATCACACTTTTATTTGGAGAATATGTAATTAATCttttgtgcaatatttttttttctttgcatgtgttcAAATaatggtataaaaaaaattcagatttgaGATAATGAAATaatccaaaaatattaaaaaaaaaaatcatcagaatACATTCCGTCGTTGTAAATGACTCGGCTTATGTTAAAGACTTGTTTTATAAGTCTGCGTTTGTTTTCTCTCGTCTCCCGGTGACCATAGTGCTTCCTTGATGATGGATTTCGTGCGTCCGTGCATGGCTTATTCACTCCAGGAGACGAAGCGTTATATTAAACCAGCGGAGGTCTGTACTGATTAGGAGTTGTTTCTTTTGACACTCATTTTTTTGGGGGTTATTGGGTCAAATCTGATGAATATTGTACTGTATACCGGATCTCAATCATCGAAGTAACAAGTCGTGCTTCTCCTCTAGGCTTTACAGCATGCAGGACGTGTGGCTTTGTAACCCACAGTCACATGATCTTTGCATATCGATCAGCACAGTGAACCTGACTAGAGGTTCATTCTAATTTTTGAACTAAATAGCACTTAAATCGTACAGATGAGGGTTTCtgaatgcatttctttttttccccacacacaccagGAAGTTTTTAATCATTCCTGATTACTGTAAAAACTCACCATGAATTATCTGCAGCCTTCTGTGATCCGTTAAATAGATGTTACACGGCACTGTTTTAACGAGTTAACACACTCCACTTTCACCTAGAACCCGAGTAAAAGGTTCTCTGTGATGCAGGACAGCTCAGTTCTGATGTTTCTTTTGTGTTCATTAAATCCCCATATATCTGAATCTATAATTATTACCTTGTACATatcagtgtacagtatgtgtcaaCAGTGTGCCTAAATGTACTGTcaattatattttcttatttttctttaacaaacaaacaaaaaaagaagtgaagctgaatgttatggtcagttgactgaaaaaaaaagactctaaGTTGGTTTAGAGTGTTTGCATCCTGCTTCCAAGATACTCCTTTTGAGCAGCAGAACTCAGTATAACACTAATAAAACTTTGACTAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577070.1 lncRNA upstream 154708 6313485 ~ 6319774 (+) True LOC117595885
TU401777 lncRNA upstream 272859 6200493 ~ 6201623 (+) True G339167
TU401768 lncRNA upstream 298885 6174321 ~ 6175597 (+) True G339159
TU401728 lncRNA upstream 346198 6116749 ~ 6128284 (+) True G339126
TU401647 lncRNA upstream 485990 5987811 ~ 5988492 (+) True G339055
TU401922 lncRNA downstream 78 6526395 ~ 6527094 (+) True G339279
TU401938 lncRNA downstream 52486 6578803 ~ 6645955 (+) True G339290
TU401951 lncRNA downstream 121862 6648179 ~ 6651826 (+) True G339300
TU402314 lncRNA downstream 424255 6950572 ~ 6951822 (+) True G339616
TU402316 lncRNA downstream 426745 6953062 ~ 6959284 (+) True G339618
XM_026929961.2 mRNA upstream 88802 6384201 ~ 6385680 (+) True twist1a
XM_026930087.2 mRNA upstream 93145 6380160 ~ 6381337 (+) True LOC113536247
XM_026929374.2 mRNA upstream 123753 6345471 ~ 6350729 (+) True polr1f
XM_026929529.2 mRNA upstream 130573 6333989 ~ 6343909 (+) True LOC113535938
XM_026929528.2 mRNA upstream 130573 6333989 ~ 6343909 (+) False LOC113535938
XM_026930163.2 mRNA downstream 2091 6528408 ~ 6569099 (+) False LOC113536295
XM_026930162.2 mRNA downstream 12767 6539084 ~ 6571258 (+) True LOC113536295
XM_026929411.2 mRNA downstream 78288 6604605 ~ 6616023 (+) True mturn
XM_026929692.2 mRNA downstream 94899 6621216 ~ 6634193 (+) True znrf2a
XM_026930046.2 mRNA downstream 126904 6653221 ~ 6662882 (+) False clptm1l
TU401842 other upstream 130611 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 2119453 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 4082004 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 4082010 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 4082107 2358128 ~ 2392375 (+) False LOC113546300
TU401948 other downstream 78340 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 184698 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1756643 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2386611 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2386656 8912973 ~ 8915844 (+) False sem1

Expression Profile