Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577046.1 |
| length | 246 |
| lncRNA type | intronic |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC117595843 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 6493637 ~ 6494246 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577070.1 | lncRNA | upstream | 173956 | 6313485 ~ 6319774 (+) | True | LOC117595885 |
| TU401777 | lncRNA | upstream | 292107 | 6200493 ~ 6201623 (+) | True | G339167 |
| TU401768 | lncRNA | upstream | 318133 | 6174321 ~ 6175597 (+) | True | G339159 |
| TU401728 | lncRNA | upstream | 365446 | 6116749 ~ 6128284 (+) | True | G339126 |
| TU401647 | lncRNA | upstream | 505238 | 5987811 ~ 5988492 (+) | True | G339055 |
| XR_004577047.1 | lncRNA | downstream | 355 | 6494601 ~ 6497743 (+) | True | LOC117595844 |
| TU401922 | lncRNA | downstream | 32149 | 6526395 ~ 6527094 (+) | True | G339279 |
| TU401938 | lncRNA | downstream | 84557 | 6578803 ~ 6645955 (+) | True | G339290 |
| TU401951 | lncRNA | downstream | 153933 | 6648179 ~ 6651826 (+) | True | G339300 |
| TU402314 | lncRNA | downstream | 456326 | 6950572 ~ 6951822 (+) | True | G339616 |
| XM_026929961.2 | mRNA | upstream | 108050 | 6384201 ~ 6385680 (+) | True | twist1a |
| XM_026930087.2 | mRNA | upstream | 112393 | 6380160 ~ 6381337 (+) | True | LOC113536247 |
| XM_026929374.2 | mRNA | upstream | 143001 | 6345471 ~ 6350729 (+) | True | polr1f |
| XM_026929528.2 | mRNA | upstream | 149821 | 6333989 ~ 6343909 (+) | False | LOC113535938 |
| XM_026930163.2 | mRNA | downstream | 34162 | 6528408 ~ 6569099 (+) | False | LOC113536295 |
| XM_026930162.2 | mRNA | downstream | 44838 | 6539084 ~ 6571258 (+) | True | LOC113536295 |
| XM_026929411.2 | mRNA | downstream | 110359 | 6604605 ~ 6616023 (+) | True | mturn |
| XM_026929692.2 | mRNA | downstream | 126970 | 6621216 ~ 6634193 (+) | True | znrf2a |
| XM_026930046.2 | mRNA | downstream | 158975 | 6653221 ~ 6662882 (+) | False | clptm1l |
| TU401842 | other | upstream | 149859 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU400576 | other | upstream | 2138701 | 4352522 ~ 4355029 (+) | True | G338163 |
| XR_004577078.1 | other | upstream | 4101252 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| TU401948 | other | downstream | 110411 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 216769 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 1788714 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU403493 | other | downstream | 2418682 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | downstream | 2418727 | 8912973 ~ 8915844 (+) | False | sem1 |
