RNA id: TU401948


Basic Information

Item Value
RNA id TU401948
length 3304
RNA type TUCP
GC content 0.41
exon number 3
gene id mturn
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6604605 ~ 6616023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCTCTCAACGAGAACGCGCGAAGTGAACGGAGGCCAGGGCCAAGATGCGACGGTGCTAGCGTCGAAATCTAGCTCCCATCACACACGCCCCCATCcccccctaaaaaaaaaagaaaagaaataaaagcaccaTGCGGATGATTTAAGGAGGCTCGGAGCGCTGAGATCTGTGCAGTAGATATTGTTTTGCAGCTTGAGCTTTGCTGCGCAGGTGCGCCGTTACGCTGCGGCAGGATGGAGTTCAAGCAGCTGGTGGACGCGGCGGAAAAATGGTGCTCAGGAAACCCGTTCGAGCTGATCTTCGCCGAGGAGGTGGACGAGCGCCGGATGGACTTCTACGCCGAGCCTGGCATTTCGTTTTACGTGCTCTGCCCCGACAACATGACAGGAGGTACCGACACTTTTcatgtgTGGAGTGAGAGTGAGGACTGCCTGCCATTCCTGCAGCTGGCACAGGACTACATCTCCTCCTGCGGACACAAAACCCTGCTGGAGGTCCTTGACAAAGTCTTCAGATCCTTCAGACCTCTCCTGGGTCTTCCAGACATTGATGACGATACGTACGAGCAGTACCATGGAGACGTGGAGGAGGAAGCAGAGACGGACCATCAGCAGATGGGTGTTAGCCAATAATATGCTTATTGAGGTGGATCGACCTTCCACGGGCCAGAGTGTTGCTtcattccctctctttttttccttcttccaagCCATCTTCACATTTCTACTGGTTTATGATATGCACTATCCCTCTGTcttacacacttgcacacatgcACCACGGCTTGTTATAATGCACGATTCCACCCTTTaccatgttggaaaaaaaaaaaaaaacattctcgGTAGACCTCCCGTGTCCttcttgttttatttagcaagcccctgctgaaaaaaaaaatatggaaaccATTTCAGGTTTCTGTTGGTTCCTGTGTAGTGGTATTTTGTATAATGGGTTGGTATCACAGTTTAATGGGTCCTAATGGTTTAACAGGTAATGCGTGACTGATTTTAGACGTGCTTAATGGTTTTCTAATGGGATTCAAGAGTCTAATGGTCTCTGATGGTAGCATTATTGTAATAAGCTGTGGTTCAGTTGCTTAATGGACCTAGTAGATTTGTTATATAATCCTGCATTTCAGGCTGTGTgtaagaaaacaggaaaacatttATATGTAGTGTTTAAGCTTATCTAGTTCAAtctgaaaaatatttcattcagtTAGTATAAATATTAGAGATGGcacgataccactttttcttttccaataccGATACTTACAccgaaaccttgagtatcagatGATATCGATACCCATctggtatttttttctttaaaaactactatggtttaattttttttaactgaaacacttcactttaaaaaatactttaaaacttgtaaaaatataggaaaaacttttttcctcttttggctgctcccatattcggggtcaccacagcggatcacccATCCGCATATTTTGATTCCAGCACAAGTTTTATGCCAGATgtccttcctgacacaaccctccccatttccaggcttgggaccagcagtGAGAGTACACTGGCTCGTGCAaccctccagtggctggggttggttccctgaccaggaatcaaacccagacTGCAGTGATGAGAGCACCACATGCTAGCCACTAGTCCACCAGGGAACCTTAAAAATTTAGGAAAAACACGTAGCTAAAACAGGACTTACACAAAACCACAGCTCAGCTAGACTTTTTCCCcacaaaaatcacatacattgcAAATAGAATTGATGTTCTTTTAATGTAATaactaaatataataaagtataaagcataaatataatgaaatcaatcctaacaaaaaagtctttatttgtaaacatttccaCTTTCAAAAAAATCTTTGACAAATCCAATTCCAGGATCagatcgatttttttttttttttttcccaatatcTGATCCACCAGATCAGATCAGTGCATTCTCTGATAAATATACCCTGTATATATACTGGATCTGAAGCTGAATCAATATCTAATACACACTTGGGAACCATCAAAACCATTAGAGCTTGTGAAATTGTTTAATGGAAACCACCAGGTTAATCCCATTAGGaagtaaacaaatatttatgtttttttgagCAAGGTGGATTATGAACCATACTGCTATTACCATTAAACACAAATTCATTCATAGAGTTCTCCTGAATATGAGACATAGCTAAAATAGCTTAATATTTCCCCAAAATTGTGGGAATAGTTAAACAGGTACTTTAAATTTAGGCTCTCATCTTCACAATGATGAATAGAGCTTGTCTTTCTGAATGTATGTACTTAGAAAGTCATGATTGATTTTCTGGTGAATAGGTGAAGAGGTGTTGTAATGTTGTAACATGTGAGACCAATCAGTGATTTCAAATGTCAGAGGTGATTTATCACACGCTTTGGAATACTCATCATCGGCTTTGTCTTTACATCTCAATATCCTTGATCATATGGCCTTGGATTGAATAGGAATAGTGATCAGTAAAGCTCTCAGCCTGCGATACTTAATGCATAATAGCCCTAGATCAGAGATAGCGTGATTgcattttcagctttctgtAAAGACAAGCCTGCGTTTACACTTATGCATCGTGGttacttttctttttggttttcAATAGTCTTTGATTGTATTAAACTATAGCCTACTTCAGGCATGTTTTCACACAAATCATGGCTAATTATAGACTTCCTCCATGATGTTTTCCTCCCAGAATACGCAAAAGTAGAAGCCTGAGTTGAGCTTTAATGTATGAAGTACAGTAAGTGTGAACATGTTGATCTGAAGCAGCTTCCTCTTTTTTCATCCTCTGGTGCTGACTGAGGAAAATATGATCCTCAACCAGCACTCAGTCTTCATGATTAAAGGCACTGAACTGACTGAAGTCTGACACACCCCACAGCAAATTCTTTCCGGACCGCTTGACCAATGTAAACAGGTTAGCAGGACCAGCAGGCACGTCACATGTTGTTCCAGGATATGAAGAAAGCTGATATGATCCTGCTGACTTCATATGTTTAGTGCCCACCTAATGCTGCCATCAAACCCCTGTATctcccacacactcactgcTTCCATGCTGTCTTCCTCAGCATTAAGTCATCCACATGTACTGAAGTCTGGTGTAAGATCAATCAAAGCTACTCTTCTATGCTCATATTTATTTGATCGTCCAGCTTTAGCACTCTGCAAgcttttgtatatttttcccACCAGTGCAAACCTCTGGGTATTTACCCCATTAAAACAACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401922 lncRNA upstream 77563 6526395 ~ 6527094 (+) True G339279
TU401912 lncRNA upstream 78340 6474482 ~ 6526317 (+) True G339275
TU401913 lncRNA upstream 78340 6474482 ~ 6526317 (+) False G339275
XR_004577047.1 lncRNA upstream 106914 6494601 ~ 6497743 (+) True LOC117595844
XR_004577045.1 lncRNA upstream 110411 6493637 ~ 6494246 (+) True LOC117595843
TU401951 lncRNA downstream 32307 6648179 ~ 6651826 (+) True G339300
TU402314 lncRNA downstream 334700 6950572 ~ 6951822 (+) True G339616
TU402316 lncRNA downstream 337190 6953062 ~ 6959284 (+) True G339618
TU402366 lncRNA downstream 617012 7232884 ~ 7233107 (+) True G339659
TU402368 lncRNA downstream 631948 7247820 ~ 7250415 (+) True G339661
XM_026930162.2 mRNA upstream 33399 6539084 ~ 6571258 (+) True LOC113536295
XM_026930163.2 mRNA upstream 35558 6528408 ~ 6569099 (+) False LOC113536295
XM_026929800.2 mRNA upstream 80531 6477323 ~ 6524126 (+) True snx13
XM_026929801.2 mRNA upstream 80683 6479964 ~ 6523974 (+) False snx13
XM_026929961.2 mRNA upstream 218977 6384201 ~ 6385680 (+) True twist1a
XM_026929692.2 mRNA downstream 5344 6621216 ~ 6634193 (+) True znrf2a
XM_026930046.2 mRNA downstream 37349 6653221 ~ 6662882 (+) False clptm1l
XM_026930047.2 mRNA downstream 37349 6653221 ~ 6662882 (+) False clptm1l
XM_026930045.2 mRNA downstream 37350 6653222 ~ 6662882 (+) True clptm1l
XM_026929412.2 mRNA downstream 48221 6664093 ~ 6666353 (+) True rplp1
TU401842 other upstream 260786 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 2249628 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 4212179 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 4212185 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 4212282 2358128 ~ 2392375 (+) False LOC113546300
TU401977 other downstream 95143 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1667088 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2297056 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2297101 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 2608768 9224640 ~ 9229436 (+) False bet1

Expression Profile