RNA id: TU401951


Basic Information

Item Value
RNA id TU401951
length 2284
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G339300
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6648179 ~ 6651826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCAGTGTGTGTAATCGCCTGATTTTAGACGGACATTAGTATTGTAAAAGGCTTCAGTcatcaaattaatttttatttctttacctTTGCTGCTGTGTATGCAGCCTGGCCAACTACAATTCGCATAGTTTCTTCtgccttttattattaaatgtagctaCTCTATTTGATCAACTGCAGAGAtcacaaacatgaaaacaacaacaaaaaaaaccttcctgCTCAGGGCAACACAAATCAAACAATAATCCTTTAATTCCCAGAACCTTTACCTTGAATGTCACTAgaacaaaaaacagaacattaaaGCATGCCATTTTCCCCCACAACATATTTCAGACACAAGCACATCTTAATGAGCCATCACATCAATCAAATCACTGATGGACAAAAAGCACTTTTCAAAAAAGTTGAGTTTAatgtacaaaagaaaaatgaatcaatatttccaaatgagaggaaaaaaaaaaaaaaaaaaaagtcctgtacacactggaaaaaaagagagaggtttAACCGATTCATCTCCTCGGTCCGCCTCTTCCACGTCCTCTTCCTCTGCCacgtcctcttcctcttcctcgtcCACGGCCAGCCACTGTGATAAGGACAAGAGATTTACTTAATCAGCGTCAGTACAGGCCACGAGCTGGACATTTAAAACCAACAACACTTcagacatttaataaaaaaaaaataaacacagatacacaaataaaactaaacatttaacaatccagttacattattatattcaaGTCTTTAAGGTGAAAAATTCTGTGTAAAGATGGAAGAAAACTGCACGAATAGGAAGATGGAAAATGCACAATCGAGTAAAAACCCACTGTGAGGTTTGACCAAATTTGAAATTTCTCTCACTTCTGGAGTTTCTTCTATAAAAGTGCTCAAAAGAAATTGTGATACGCACGACATCTCTCAGAAGTGTATCGTAACATTATTTATCATGACAATGATAAATGGCTTCTTATTCACTAACAGTGATTGCCACACAGGGCAGGACATGTGATGCAGAACCCACACAGTGCAACAGACACCACTGCACATGTCCCGAGCGATAGtcaatggacattatcacaacGCAGCTTTACAGAATGTCGATATGATCATATATCATCAACACCGTGATAAACTGTCAATATGCTTTGGCgacattgtgattttttttttttttatatatgtgagGAAGTGGCTAATACGAAGTCAAAACTTTATACCGTCATTTACATGcaatattttacagattttaaagaaaattctccatgttacattttcttatatcataaaaaaaaattatacgttattatttataatagcctctttttttgcagtgtaatacCACTGTATTGCTAGCCTTGTGATATTTCTGTCGTCTCGCCCAGCCCTACCACTAAAATATGAAACTCCATAAAGTGCCTGTTGGAAATGGGTTACTATCTAATATCCCTTCTGGGATACATACTCTTCATAAAGATTccttttcaaatatttcaatagAAAATGAGTATATATTAAATTCATATAAAGAATTGCCATAAACAGCTGGCAGTTTACTCAGAGAAGGGTCCTCTGAAACTAGAAAGTTCGCTCTACAGCATCATTTTTATGTTTGGCTCCAAACCCTGAGCCGTAACGGCAGGGATCCGTCTCCGTCTCTGCACTTACCCGCCTCCCTCTTCTTCGACTTGATTTTGGGCTCGATGTCCACCAGCAGGGTGTCGAGGGGAAGGCTGTCGGGCAGGATGAAGTAGCGGATGTTGTTGCCGCGGATGCTCAGGGACTCGAGCTGGGTGGGTTCTCTGTTTTTCAGGGTCATCTTCACCGCTTTCAGGTGAGTGTTCATGCTCACATCCACACCTGAGTTACAGGaggaacaaaaagagagaaaacagcacTAATGAATTTTCTAGGTTGTCCTGTGAACATCTTCCATATTATTCACAATACAAACagcatttataataaatatttctttcagTGGGATTTAAACAGCATTAAAGCACTGACAAGTTCATGTGTGTGATACCTGTGATAGTGCCGTGGACCTGGGTGCCATTCTTCAGCTCAATGGTAACTGTTTCATGGCTCAATTTCATCAAAAAACCGAACGAGTTTCATGATGGCAGTGGATTTCGAAACAAAACCCTCTACCAAAGTGAACAAAAAATTGTAGCACAACGACAGAAGTTCGTTAATCGCTACGGAAACACAGAGAACTGCTTCCGGTGTTAAACGGAAGGACTCCCTTCACGTTTACGTCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401938 lncRNA upstream 2224 6578803 ~ 6645955 (+) True G339290
TU401922 lncRNA upstream 121085 6526395 ~ 6527094 (+) True G339279
XR_004577047.1 lncRNA upstream 150436 6494601 ~ 6497743 (+) True LOC117595844
XR_004577045.1 lncRNA upstream 153933 6493637 ~ 6494246 (+) True LOC117595843
TU402314 lncRNA downstream 298746 6950572 ~ 6951822 (+) True G339616
TU402316 lncRNA downstream 301236 6953062 ~ 6959284 (+) True G339618
TU402366 lncRNA downstream 581058 7232884 ~ 7233107 (+) True G339659
TU402368 lncRNA downstream 595994 7247820 ~ 7250415 (+) True G339661
TU402412 lncRNA downstream 743248 7395074 ~ 7399070 (+) True G339700
XM_026929692.2 mRNA upstream 13986 6621216 ~ 6634193 (+) True znrf2a
XM_026929411.2 mRNA upstream 32156 6604605 ~ 6616023 (+) True mturn
XM_026930162.2 mRNA upstream 76921 6539084 ~ 6571258 (+) True LOC113536295
XM_026930163.2 mRNA upstream 79080 6528408 ~ 6569099 (+) False LOC113536295
XM_026929800.2 mRNA upstream 124053 6477323 ~ 6524126 (+) True snx13
XM_026930046.2 mRNA downstream 1395 6653221 ~ 6662882 (+) False clptm1l
XM_026930047.2 mRNA downstream 1395 6653221 ~ 6662882 (+) False clptm1l
XM_026930045.2 mRNA downstream 1396 6653222 ~ 6662882 (+) True clptm1l
XM_026929412.2 mRNA downstream 12267 6664093 ~ 6666353 (+) True rplp1
XM_034298327.1 mRNA downstream 121493 6773319 ~ 6775535 (+) True LOC113536346
TU401948 other upstream 32307 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 304308 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 2293150 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 4255701 2358128 ~ 2392478 (+) False LOC113546300
TU401977 other downstream 59189 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1631134 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2261102 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2261147 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 2572814 9224640 ~ 9229436 (+) False bet1

Expression Profile