Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU402314 |
| length | 1096 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 2 |
| gene id | G339616 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 6950572 ~ 6951822 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU401951 | lncRNA | upstream | 298746 | 6648179 ~ 6651826 (+) | True | G339300 |
| TU401938 | lncRNA | upstream | 304617 | 6578803 ~ 6645955 (+) | True | G339290 |
| TU401922 | lncRNA | upstream | 423478 | 6526395 ~ 6527094 (+) | True | G339279 |
| XR_004577047.1 | lncRNA | upstream | 452829 | 6494601 ~ 6497743 (+) | True | LOC117595844 |
| XR_004577046.1 | lncRNA | upstream | 456326 | 6493730 ~ 6494246 (+) | False | LOC117595843 |
| TU402316 | lncRNA | downstream | 1240 | 6953062 ~ 6959284 (+) | True | G339618 |
| TU402366 | lncRNA | downstream | 281062 | 7232884 ~ 7233107 (+) | True | G339659 |
| TU402368 | lncRNA | downstream | 295998 | 7247820 ~ 7250415 (+) | True | G339661 |
| TU402412 | lncRNA | downstream | 443252 | 7395074 ~ 7399070 (+) | True | G339700 |
| TU402435 | lncRNA | downstream | 497928 | 7449750 ~ 7467646 (+) | False | G339721 |
| XM_034298327.1 | mRNA | upstream | 175037 | 6773319 ~ 6775535 (+) | True | LOC113536346 |
| XM_026929412.2 | mRNA | upstream | 284219 | 6664093 ~ 6666353 (+) | True | rplp1 |
| XM_026930046.2 | mRNA | upstream | 287690 | 6653221 ~ 6662882 (+) | False | clptm1l |
| XM_026930047.2 | mRNA | upstream | 287690 | 6653221 ~ 6662882 (+) | False | clptm1l |
| XM_026930045.2 | mRNA | upstream | 287690 | 6653222 ~ 6662882 (+) | True | clptm1l |
| XM_026930099.2 | mRNA | downstream | 43491 | 6995313 ~ 7008911 (+) | True | cndp2 |
| XM_034298549.1 | mRNA | downstream | 284278 | 7236100 ~ 7278140 (+) | True | tshz1 |
| XM_026930080.2 | mRNA | downstream | 522885 | 7474707 ~ 7477662 (+) | True | galr1a |
| XM_026929450.2 | mRNA | downstream | 571108 | 7522930 ~ 7531501 (+) | True | sall3b |
| XM_034298588.1 | mRNA | downstream | 582218 | 7534040 ~ 7580421 (+) | True | atp9b |
| TU401977 | other | upstream | 233426 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU401948 | other | upstream | 334700 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401842 | other | upstream | 606701 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU400576 | other | upstream | 2595543 | 4352522 ~ 4355029 (+) | True | G338163 |
| XR_004577077.1 | other | upstream | 4558100 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| TU403100 | other | downstream | 1331138 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU403493 | other | downstream | 1961106 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | downstream | 1961151 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403677 | other | downstream | 2272818 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU404551 | other | downstream | 3522661 | 10474483 ~ 10481970 (+) | True | G341451 |
