RNA id: TU402435


Basic Information

Item Value
RNA id TU402435
length 1365
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G339721
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7449750 ~ 7467646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttaatttgtatataatttcaCAAACTACATTGATTTGTCCATTGACTTCAAtgttatgggctattttgtatAGACTATGactatattaatttattcagcAAGTTAACCAACCTTGTTACATATTACAGGAGatgctcagtgctgttattctctccaagTAAAAGAACACTGCTTTGTGAAGAGCAGACACACATAATATAACAACACATATACTTAGGaatttttatttgatgttaCTTAAAATATCAACTGATTAAAAGTATTACACATCATAACTTAAAAACTTGGCCACTCTTACGTAAATATTCTCCGCATTATGAATCTGTAGCACCATTTGGGATGTATACAGCGCTGATGGGCAGAAtaactgaaatttatttatatgttcaGCACTCATTCATAAACAGCACATACATGAAAGTTCTATGagacataaaacaaaatatgagGACACATTATAAACAGAAGGCTATCTGTAACATAGACTGAATTAAACCAATCTCACTCATCTCATCTCTATTCTTTCTATCCTTTCATTGCTGCTCATTTCTTTTCTCATATCTGTCTTTCACTTTTCGTTTCCTCTCTCACACCTTCGCTACCTTTGAAGCGCTGCCatcttggaattttttttaccctttctttttttggataTATTATGCAAAAGTAATGAACAGTAAATATGTGAAACATTTCCACTCATTGTATTTCTAagccattaaaataaatattttactacaTCAGTGCAATTGAAGGGCATTTCATTAAGTCTCTGCTGGCTTGGATACTGCTTTCCAGTTCCGAGACTTACAATTTTAGTATCTGTTGCAATTTTTTCTATTAATTATTGTTATACAAATTGATATTTTATTGTCATGcattaataatatacaatactgAATGTTATAAAGAACTCTTAAATGGCAAAACACAGTCCAAAATCCTATAtgcaaatcattttaaacatagaAACATACTATACATGACAGGACACTTGACAACCACAAAGAACGCACACGATGTCCAAAAATACACTACACTTACATAAACAACCCGGAATCATTTCTCACAGTATTATGTGGATTAAAGTATGACATTGAATAATGTATCAAAGTAAAAAATGCACTTAGTGTAAATTTCACATGGAGAAAAGACAAAGTGATTGAAAACCACctttaataaaaaagagacTATTGATTACTATAGCTATTGCattatattttaaagtaaaatcaaGTAGGAGGTGGCCTTATATTGAATTATATTACTCTTATTACTTATATGAAACTCAAGTGGGCTAGTGCGTTGTCATGGAGGTTGCCATTTTGGTAGGATATGCATCGGTTTGATTATTTTCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402412 lncRNA upstream 50680 7395074 ~ 7399070 (+) True G339700
TU402368 lncRNA upstream 199335 7247820 ~ 7250415 (+) True G339661
TU402366 lncRNA upstream 216643 7232884 ~ 7233107 (+) True G339659
TU402316 lncRNA upstream 490466 6953062 ~ 6959284 (+) True G339618
TU402314 lncRNA upstream 497928 6950572 ~ 6951822 (+) True G339616
TU402542 lncRNA downstream 205334 7672980 ~ 7674655 (+) True G339804
XR_003403651.2 lncRNA downstream 297107 7764753 ~ 7772456 (+) True LOC113535942
TU402580 lncRNA downstream 345986 7813632 ~ 7813864 (+) True G339830
TU402787 lncRNA downstream 421058 7888704 ~ 7889014 (+) True G339965
TU402875 lncRNA downstream 530437 7998083 ~ 7998288 (+) True G340047
XM_034298549.1 mRNA upstream 171610 7236100 ~ 7278140 (+) True tshz1
XM_026930099.2 mRNA upstream 440839 6995313 ~ 7008911 (+) True cndp2
XM_034298327.1 mRNA upstream 674215 6773319 ~ 6775535 (+) True LOC113536346
XM_026929412.2 mRNA upstream 783397 6664093 ~ 6666353 (+) True rplp1
XM_026930045.2 mRNA upstream 786868 6653222 ~ 6662882 (+) True clptm1l
XM_026930080.2 mRNA downstream 7061 7474707 ~ 7477662 (+) True galr1a
XM_026929450.2 mRNA downstream 55284 7522930 ~ 7531501 (+) True sall3b
XM_034298588.1 mRNA downstream 66394 7534040 ~ 7580421 (+) True atp9b
XM_034298589.1 mRNA downstream 66394 7534040 ~ 7580421 (+) False atp9b
XM_026930035.2 mRNA downstream 124980 7592626 ~ 7636971 (+) True nfatc1
TU401977 other upstream 732604 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 833878 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 1105879 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 3094721 4352522 ~ 4355029 (+) True G338163
XR_004577079.1 other upstream 5057375 2358128 ~ 2392375 (+) False LOC113546300
TU403100 other downstream 815314 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 1445282 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 1445327 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 1756994 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 3006837 10474483 ~ 10481970 (+) True G341451

Expression Profile