Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026929430.2 |
| length | 491 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 3 |
| gene id | sem1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 8912928 ~ 8915846 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0000502 | proteasome complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577075.1 | lncRNA | upstream | 21920 | 8875957 ~ 8891060 (+) | False | LOC117595890 |
| XR_004577073.1 | lncRNA | upstream | 21920 | 8876951 ~ 8891060 (+) | False | LOC117595890 |
| XR_004577074.1 | lncRNA | upstream | 21920 | 8880308 ~ 8891060 (+) | True | LOC117595890 |
| TU403270 | lncRNA | upstream | 53317 | 8850968 ~ 8859663 (+) | True | G340339 |
| TU403267 | lncRNA | upstream | 67296 | 8844274 ~ 8845684 (+) | True | G340336 |
| TU403494 | lncRNA | downstream | 760 | 8916606 ~ 8917800 (+) | True | G340517 |
| XR_004576996.1 | lncRNA | downstream | 47091 | 8962937 ~ 8966727 (+) | True | LOC117595810 |
| TU403554 | lncRNA | downstream | 138554 | 9054400 ~ 9058481 (+) | True | G340574 |
| TU403587 | lncRNA | downstream | 212555 | 9128401 ~ 9131271 (+) | False | sgce |
| TU403581 | lncRNA | downstream | 217198 | 9133044 ~ 9134179 (+) | False | sgce |
| XM_026929967.2 | mRNA | upstream | 38538 | 8872595 ~ 8874442 (+) | True | dlx5a |
| XM_026929455.2 | mRNA | upstream | 69862 | 8839251 ~ 8843118 (+) | True | chrac1 |
| XM_026929643.2 | mRNA | upstream | 88155 | 8820384 ~ 8824825 (+) | True | c23h6orf62 |
| XM_026929829.2 | mRNA | upstream | 98011 | 8767996 ~ 8814969 (+) | False | ripor2 |
| XM_026930225.2 | mRNA | downstream | 118616 | 9034462 ~ 9053330 (+) | True | pdk4 |
| XM_034298368.1 | mRNA | downstream | 203168 | 9119014 ~ 9133558 (+) | False | sgce |
| XM_026929620.2 | mRNA | downstream | 203169 | 9119015 ~ 9133558 (+) | True | sgce |
| XM_034298369.1 | mRNA | downstream | 203170 | 9119016 ~ 9133558 (+) | False | sgce |
| XM_026929622.2 | mRNA | downstream | 203171 | 9119017 ~ 9133558 (+) | False | sgce |
| TU403100 | other | upstream | 627776 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 2195834 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU401948 | other | upstream | 2297108 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401842 | other | upstream | 2569109 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU400576 | other | upstream | 4557951 | 4352522 ~ 4355029 (+) | True | G338163 |
| TU403677 | other | downstream | 308794 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU404551 | other | downstream | 1558637 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 2376478 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 2376478 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 2894263 | 11810109 ~ 11815273 (+) | False | sostdc1b |
