RNA id: TU403554


Basic Information

Item Value
RNA id TU403554
length 4082
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G340574
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9054400 ~ 9058481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGATGTATCCTTGTTGTGTTGTGGAGTTTGTATTGTAACTCATTTGCAAATATGTTGCGCTACAGAGCCCATGATAATGACTAGTGGGAGGTGTTGATGAGTGTCTCCATATTTTTGTTTAAGTGGGTATGCCCTCTTCTAATCTGATTGTATTGTAATCTTGTATTGATAGTTCCTtagtcttcatgatgctgtttgatTAGAGtttgttctctaacaaactctggtgccttccaggaacaggtgtatttatattgagatcatatGACAACAGATGACATGTGACAACCATGTGACATCTTATAGCAACTGGTGGCACCAGACATTATTTATGAGTTTCATagcaatgggggtgaatacttccaaaacttttccttttgtttatttgtgaataattttaaaactataaCTTTTAAAACTAAGACTTTTCCCTCACTTCAGttttatgggctattttgtgtagattcatgtcATAATCCCAATTATGCCCATTTCCAGGtgataacactacaaaatgtggaaatgttcaagAGGGTTAATACTTAAGCAAAGCACGGCAGCTTCTCTGAAATCTTTGTGTACTACTTGCCAGTTTTTTACTATTGATATTAATGGTTCCAGTGTTAAATGTTGGTTCTAGAACTTTTTGCTGTGTCATCCTTCCACATATCCTTCTTCTCCATGCCTGTTACAAAAGAAGAGCTGGCTTTCTGGCATGGAGCCAGTGTGTAGTCCTGGAGTTCAGCCACGTGCCTAGAACACtgtgttctctctttctttggtTCTCCTGCCGTACCAGTCATAAACGCTCATGTGGCCACAACACAGTCTTATTTAAGGAACATGTTTCTGGATTACTCCCTGACCTTTCACTTAGTAACACCAAGCTGCTGTTTTCAAAGATGCCGTCATCtctgaataaatgtttatgtaagaGCAAGAACATGCACACGGATGAGTATATATGGAGTTCATGCTACTACTAGGAATTTGTTCTTTGGTCTGATGCAGGGGTCTGTAACTTGATGGTTGGTTACGAGCTTCTTTTTCTGCTCTGAATGGAAACGGGATGTGCACTGAGGAAAGTCATTACTTCCAGATGACACTCTGTGGGTGATTGATTACACGTTCCTCTAAGCTCACACGCAAACACACCCAGAACTCTGACCTCTGAGTAGTGAGAGACAGTAGCAGGAGGTGACACAAGTTTACATATAACAGGATCAGCTCAGAGTAAATGGTTGATCAGAACCTTTGTTAAAGGCTTGCTGAGGTCAGTGACAGCCTGAGTGGTGTTTACAAATGTAAACTAGTGGATGTAAATTTCAACGTAGCTACTTTACGATGTGTTAATTTATGAATGTAGTTGACACAGCAACATCGCATCCTTGTCAATTCTTTAACTTCTCTGAAACGGCTTGAGAAAGAGTTCAAAAGGATTAGTGGCTTAAATACCTCTTTTCATTCAGCTGCCAACTACAAAGCTCTGCTGACATCATGCCTCACATTTATCctcttattttaaacaaaactctCTTATATTATTAACTCCCTGAAATCTGTACTGAAATCTTATGGCTCATAACCGTTTGTTTAGATGAATGcagaatgagatttttttttagtttgctaAGACAAATGCCATATTTATCACTGATGCTctcaaacatgttttttttttttttcattgataaATATATTGCCTTCAAAGGAATAATTTCAAAGTGAATCTAACAATAATGGTTTACAGTATCTTGAACAATTTGTGAACATTTCAATATTAGAAAAGGCCAGACCATAAAACCTGCTCACATATATGTTcttagaaataaatacactgcCAATTAAAAGTTTTTGAACACTTGGAAGTTTTTTaggttttattacagtttacgcACTACTGAGAAtcaaatgaggaaaaaagtaaataagcaATCCATGAAATACCTAAATCTCTGTATTTAAGGACTTCTTCATCGTCCACTTTCAGATTCTAATGGGATTCTAAATGAGTGCTATTAAAGGCAAGTGCACTTGTTTGGTAAAGCCGTTACTCTAAGACTGTTAGTTATTGTAAGCCTGGATTTGTCTTACAGTTAATGTTAGTCAGTGTTAGTAGGCTATCAGCTGTAAGAATATATGGTGTGTGCTTCATGTACCTAATTAGAATGGTCCAGATAAATCTAGTCTTTTCCAGTTAGCTCTACATTTTTTCCCAATAAAATAAACgtatttttcaaacaaacacttttctgttcatttatacCTATTTCCTGCTTAGATTTTCTAATACTAGAGTAATTCACTTGACcctgttatttgttatttaactCAGAATGTTAATATAGGGTGTTGGAAAAACTTCTGAATGGCAGTGTATTTTATAAGAATGAAAATACTGTAGATATGACCAAAGCTGCAGTGCAAACTCAAGCATTTTCCTGAGAGCACTTATATCCCAGAAGGTTTAATGTGGACAGAGTTTGAGATTGGCACATTCTAAATTCACCTTTGGGCCAATACAGTCACTAGTATACGATTCCCACAGGTTCGAGCAGTATGTATCGTTTGATTGATGGAGGCAGTGGGAGTCGTTTAATGCCTGATTCACAGCAGCAGCCCATCGCCATACGGATGGCACATCTGGCCAGGTGTTGCAGAGAACGCGGACTGGCGCAGGCAGCAAACAACGAGTCATAAAACTTCCCGTGGCTCTTaatgaaagaaggagagaaatgtAAGGTTCATAACTGATaaagaatatactgtatatgtacataacAGTGGATAGACAGGCTGTTCAATGCATTATGGTAAACTGCCCACATTCCAGCAGCAAGGTTGTTCAGAAAATTATGTTTGTAGTTCAAATATTAGAACATGCCCACTTTAAAAGTGTTCCTTATGATATATTTGGATCGTTAACATGTTCAGCTTCCTAATGGGTTTAGAAAACTTTTGGAAATGGCAAATCCTCTTttgaacctttaagggttctcccaGAAGGACAAAGGAAATAATGCTTTAGAGTGATAGATTGAAACTTTTTCTCTTATggactaaataaaataatatactcCAGTCAAGTTGTTTTCACACTTGACCCAAACACCTGAGCATTTCACACAAACAAATTTCCTTCCAAGTTGCAAAATAACGTGCTATGTATAATCACATTTTTCAATGCCCAAACCAGGAAGTGAAACACTGTCACTAAAGGTACAGTGCACACCCAAGTTCACTTGAAATTTTTAGGTAAACCACATCAGTTGCCTTGACCACAGCTGGGCACAAAAACAGCATTCACACTCGACCAGATGTACTTAACTCTCAGCACAAAGAATTGGTTAAAAAAGACACCCAATTCCAAACACTTTGGGCCTCACTGAAAAACCTTGTATGTTGTGTCAGGAATAGCTTCCCTCCATTTTGGGGTACTCATGAGATGCTCATAGGAATTTGCCATCACCTCAACTGTCTTGGGGTCATCATGGCAAATCTCCAACACCTAATTAATAGAAAGGATAAAGTGTTATTCTCAatcaaataataacaaaaatacgaGATTAAGACATTTTTCAGTGGTAAATTAGCAGTGGACTGTAACTGAACTGTGTAATTTGTACCTTGTAGAAATGTTTTGGGTAGATTCTGGCTGCTCCATAGTTAAGCAGGAGCTGGAAGCAGCGATATGGTACACAGTAAGGCCGCATCTTCACCATTCTTAGCACATACTGAAGGGCTGCGCAACCGTTCATATCCATGATCTTGGGATCAGCCCCAGCATCAAGCAGAATCTTCATCAGCACTTGGTCGCAGTTCCATGAGGCTTTAtgcagtgctgtttttttgtcatCTTCCTGGAGGTTTGGGTTGGCCCCATAGTCCAGCAGCATGCGGCACACAAGATGGTGCTGCTCGCTGTAAGTCTGCTCACGGGCATCCATAGCCCAGAAGGCAGCCGTGATCAAAGGGGTCTCCATATGGGCATTGAGCATATTCACATCAGCACCATGCGCAGCGTAAAGGCCAACCAGCTCAGAGATACCAAGGCGTGCGGCTATGTGTAGTGGAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576996.1 lncRNA upstream 87673 8962937 ~ 8966727 (+) True LOC117595810
TU403494 lncRNA upstream 136600 8916606 ~ 8917800 (+) True G340517
XR_004577075.1 lncRNA upstream 163340 8875957 ~ 8891060 (+) False LOC117595890
XR_004577073.1 lncRNA upstream 163340 8876951 ~ 8891060 (+) False LOC117595890
XR_004577074.1 lncRNA upstream 163340 8880308 ~ 8891060 (+) True LOC117595890
TU403587 lncRNA downstream 69920 9128401 ~ 9131271 (+) False sgce
TU403581 lncRNA downstream 74563 9133044 ~ 9134179 (+) False sgce
TU403588 lncRNA downstream 76568 9135049 ~ 9135716 (+) True G340600
TU403582 lncRNA downstream 79218 9137699 ~ 9139548 (+) True G340594
TU403585 lncRNA downstream 81958 9140439 ~ 9141145 (+) True G340597
XM_026930225.2 mRNA upstream 1070 9034462 ~ 9053330 (+) True pdk4
XM_026929430.2 mRNA upstream 138554 8912980 ~ 8915846 (+) False sem1
XM_026929967.2 mRNA upstream 179958 8872595 ~ 8874442 (+) True dlx5a
XM_026929455.2 mRNA upstream 211282 8839251 ~ 8843118 (+) True chrac1
XM_026929643.2 mRNA upstream 229575 8820384 ~ 8824825 (+) True c23h6orf62
XM_034298368.1 mRNA downstream 60533 9119014 ~ 9133558 (+) False sgce
XM_026929620.2 mRNA downstream 60534 9119015 ~ 9133558 (+) True sgce
XM_034298369.1 mRNA downstream 60535 9119016 ~ 9133558 (+) False sgce
XM_026929622.2 mRNA downstream 60536 9119017 ~ 9133558 (+) False sgce
XM_026929681.2 mRNA downstream 166123 9224604 ~ 9229638 (+) True bet1
TU403493 other upstream 138556 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 138556 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 769196 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2337254 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2438528 6604657 ~ 6615872 (+) False mturn
TU403677 other downstream 166159 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 1416002 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2233843 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 2233843 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 2751628 11810109 ~ 11815273 (+) False sostdc1b

Expression Profile