RNA id: XM_034298368.1


Basic Information

Item Value
RNA id XM_034298368.1
length 2670
RNA type mRNA
GC content 0.44
exon number 12
gene id sgce
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9119014 ~ 9134179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCCCACAATGCGCCGGGCTCGGAGAGGTGGGAGGGAGGAATTTCAGCTAACGGGAGGGATGCTGATGGCTGCTCAGTGCCTGCTATCATCACCGAAAACTCACACCTGTAACGCAAACCCGCACGGAGACCACTGAACCATGGACCCTCTGAGCGTCTTCGTGTGGCTGTTAGTAGCTTGTGAAGGCCATAGTCAAATCCAGGCTTTAGTCGACTCTACACAGAAGGCTGTGCCTCATACGGGCGTGGTCACCATCGTCTCTCGCTCGCATGCGGACCGGAACGTCTACCCTTCAGCTGGAGTGCTGTTTGTCCATGTCCTGGAGAGGGAATACTTTAAAGGGGAATTTCCTCCTTATCCAAAGCTAGGGGATACCAGCAATGACCCAATCACCTTTAATACCAACCTGAAGGGTTATCCAGACAGGCCCGGGTGGCTGCGCTACATCCAGCGAACTGCACACAGTGATGGAGTCCTTTACGGCTCCCCCACTGCGGAGCACGCGGGCAAACCAACCATCATCGAGATTACTGCCTATAACAGACGCACTTTCGAAACAGCAAGGCACAATTTGGTCATTAACATCATGGGTACAGAAGAATTCCCCTTGCCGTATCAGGCCGagttttacattaaaaacatgaatgTAGAGGAGATGCTAGCCAGTGAGGTACTGGGAGACTTCCTGGGTGCTGTGAAGAACGTCTGGCAGCCTGAGAGGCTCAATGCCATTAACATCACTTCAGCGCTAGACCGGGGTGGACGTGTGCCCCTGCCTATCAACAACCTGAAAGAGGGCGTGTATGTGATGGTGGGAGCAGACGTGCCGTTCTCATCATGCCTGCGTGAGGTGGAGAGTCCTCAGAACCAGCTGCGCTGCAGTCAGGAGATGGAGCCAGTCATCAGCTGTGACAAGAAGTTCAGAGCTCAATTCCACATCGACTGGTGCAAAATCTCTTTGGTGGATATTACTAAAGTCATCCCTGTGCACAACAGCCGTCCGGAACCGGGCACTGGAGTGCTGCCAGACGTCGGTGACTACAATCCGCCCTCTGAGTCACTGAAAAGTAAAGACTATTTTGCTGACTTCCTGGTCACATTGGCTGTGCCGTCTGCTGTTGCTCTGGTTCTCTTCGTCATCCTGGGTTATTCGATGTGCTGTCGGCGAGAAGGAGTCATCCAGCTGGTGCACCACAGCTCCATTCAGAAGTCAACAAAGGAGCTGCGCAGCATGTCAAAGAACAGGGAGATCTCCTGGCCTCTCTCCACGCTGCCTGTGTTCAACCCTGTGAGTGGAGAGGTGGTGCCACCAATCCACCCAGAAAACTACGAGACTACCAGCATGCCACTCATGCAGACCCAGACAAATCTTCAAAATCAAATGCAGATACCACAGCAGCAGCCTTCGGGAGATAATTACAGTTTGTCAACATTTCGAAGGCTGGAGGTAAATGGTATTCCTGAAGACAGGAAAGTGGCTGAAGCGCTGAATTTATGAGGAGATCTCTCATCACTCGCAGCTTCCTGTGcctgtgtaatgtgtgtttccACATTGTGCCAAATCTGCATATGCTATAGCTCTGTGATCCTGTGCAGCACCACCGAGATGTAGTCCAAGCAGCAGCTGAGCTAATGATGGCTACGCTCACATGACCATATCTGAACTATTTAAATATCTGAAGGTATTTTGAGGTAATTGTCTTCTTGGGACCATTTAAAGCAACACATTGAAGCTTGAACAGACTTTCATTGAATACGCAACTTtagttttttcttctcttaCTCTACTAAAGATGTTTTGATAGTTAATAAACTTGTCCATGTAAAAATATTCTATCTGTAGTATCATGAGCATGTGTAACAATTTAGAATTGTCATGTGTGCCAGTGGATatgctggggggaaaaaaaacagtccaaaGTATGTTCAGCAAGGTGTTTTATCACTGACAATGATTTAACAACAAACCAGcatttctaaaagaaaatacatcCTTTTCACATTTCAGGacaaaatgattatatttacatCAGCATGGCATgaatcttattattttttttttttacagaggtCCAAACTAAACTATATAATACATTTGAACAAagtcttaaaaaataaaatccacacaTTTATAATTGGATAAATAGCTGTAAGGTGGAGTGAATCCATCAGATTATAGCTGCAGTTTGGCTTAAACGCCACTTCAAGAAATAAAAGGCTTACTTTTACACAAGATCTTGTTTGCTTTTTATCTTGTCTTCCTATAATGGAAGAAAAGGCTAAAATAGCGCAGACTTTGTACATCTGCAAAATACTATGACTATAAAATGAAGCTATGgtacaaaattaaattacaaatgtcTGATAATTGTAGCTAGCATCCAGCTAGTGGCCCTtcgatgaggatgatgaagattgtATTggcacaatataaataaaaatctatctaCGCAAATAAGGACACTATACACCCTTATTCTACAGTTCCCAAATAATGTTACCAAACAGcataaataaatccaaatgGAGAATTAGATCAGATAAACATGGCTGTAATTTAACCAAATAAGCCGATTTACTCTTTCACCAGCAGGATTGCTTAAAACTGCTattgctctaaaaaaaaaaaaaattaacagacTTAGAAAAACTACTTCTCTCCATCTT

Function

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403554 lncRNA upstream 60533 9054400 ~ 9058481 (+) True G340574
XR_004576996.1 lncRNA upstream 152287 8962937 ~ 8966727 (+) True LOC117595810
TU403494 lncRNA upstream 201214 8916606 ~ 8917800 (+) True G340517
XR_004577075.1 lncRNA upstream 227954 8875957 ~ 8891060 (+) False LOC117595890
TU403588 lncRNA downstream 1491 9135049 ~ 9135716 (+) True G340600
TU403582 lncRNA downstream 4141 9137699 ~ 9139548 (+) True G340594
TU403585 lncRNA downstream 6881 9140439 ~ 9141145 (+) True G340597
TU403584 lncRNA downstream 14253 9147811 ~ 9148293 (+) True G340596
TU403575 lncRNA downstream 23900 9157458 ~ 9177134 (+) True G340592
XM_026930225.2 mRNA upstream 65684 9034462 ~ 9053330 (+) True pdk4
XM_026929430.2 mRNA upstream 203168 8912980 ~ 8915846 (+) False sem1
XM_026929967.2 mRNA upstream 244572 8872595 ~ 8874442 (+) True dlx5a
XM_026929455.2 mRNA upstream 275896 8839251 ~ 8843118 (+) True chrac1
XM_026929643.2 mRNA upstream 294189 8820384 ~ 8824825 (+) True c23h6orf62
XM_026929681.2 mRNA downstream 91046 9224604 ~ 9229638 (+) True bet1
XM_026929404.2 mRNA downstream 118548 9252106 ~ 9255479 (+) True tfpi2
XM_026930171.2 mRNA downstream 130203 9263761 ~ 9315951 (+) True calcr
XM_034298534.1 mRNA downstream 447357 9580915 ~ 9594532 (+) True LOC113536235
XM_034298535.1 mRNA downstream 447357 9580915 ~ 9594532 (+) False LOC113536235
TU403493 other upstream 203170 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 203170 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 833810 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2401868 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2503142 6604657 ~ 6615872 (+) False mturn
TU403677 other downstream 91082 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 1340925 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2158766 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 2158766 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 2676551 11810109 ~ 11815273 (+) False sostdc1b

Expression Profile