Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU403585 |
| length | 707 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 1 |
| gene id | G340597 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 9140439 ~ 9141145 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU403582 | lncRNA | upstream | 891 | 9137699 ~ 9139548 (+) | True | G340594 |
| TU403588 | lncRNA | upstream | 4723 | 9135049 ~ 9135716 (+) | True | G340600 |
| TU403581 | lncRNA | upstream | 6260 | 9133044 ~ 9134179 (+) | False | sgce |
| TU403587 | lncRNA | upstream | 9168 | 9128401 ~ 9131271 (+) | False | sgce |
| TU403554 | lncRNA | upstream | 81958 | 9054400 ~ 9058481 (+) | True | G340574 |
| TU403584 | lncRNA | downstream | 6666 | 9147811 ~ 9148293 (+) | True | G340596 |
| TU403575 | lncRNA | downstream | 16313 | 9157458 ~ 9177134 (+) | True | G340592 |
| TU403576 | lncRNA | downstream | 16313 | 9157458 ~ 9177134 (+) | False | G340592 |
| TU403577 | lncRNA | downstream | 16313 | 9157458 ~ 9177134 (+) | False | G340592 |
| TU403578 | lncRNA | downstream | 16313 | 9157458 ~ 9177134 (+) | False | G340592 |
| XM_034298368.1 | mRNA | upstream | 6881 | 9119014 ~ 9133558 (+) | False | sgce |
| XM_026929620.2 | mRNA | upstream | 6881 | 9119015 ~ 9133558 (+) | True | sgce |
| XM_034298369.1 | mRNA | upstream | 6881 | 9119016 ~ 9133558 (+) | False | sgce |
| XM_026929622.2 | mRNA | upstream | 6881 | 9119017 ~ 9133558 (+) | False | sgce |
| XM_026930225.2 | mRNA | upstream | 87109 | 9034462 ~ 9053330 (+) | True | pdk4 |
| XM_026929681.2 | mRNA | downstream | 83459 | 9224604 ~ 9229638 (+) | True | bet1 |
| XM_026929404.2 | mRNA | downstream | 110961 | 9252106 ~ 9255479 (+) | True | tfpi2 |
| XM_026930171.2 | mRNA | downstream | 122616 | 9263761 ~ 9315951 (+) | True | calcr |
| XM_034298534.1 | mRNA | downstream | 439770 | 9580915 ~ 9594532 (+) | True | LOC113536235 |
| XM_034298535.1 | mRNA | downstream | 439770 | 9580915 ~ 9594532 (+) | False | LOC113536235 |
| TU403493 | other | upstream | 224595 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | upstream | 224595 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403100 | other | upstream | 855235 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 2423293 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU401948 | other | upstream | 2524567 | 6604657 ~ 6615872 (+) | False | mturn |
| TU403677 | other | downstream | 83495 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU404551 | other | downstream | 1333338 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 2151179 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 2151179 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 2668964 | 11810109 ~ 11815273 (+) | False | sostdc1b |
