RNA id: XM_026929681.2


Basic Information

Item Value
RNA id XM_026929681.2
length 1449
RNA type mRNA
GC content 0.40
exon number 4
gene id bet1
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9224604 ~ 9229638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGACGACTCGACGTGTCACTATACCGGCTTCCGTAGGCTGTCGTGGCGTGAAAACGTAGGCTAACAGTTGTGAGTGATATCAGAAGTGTAGCAGGATTGAGCTTGTGTTCGTCTTAGACTCTGTTTAAAGAGCGAAGACGTTGTTTTTAGCAGTCAGGTGAGGTGACTGTAGGAGAAacacagctgaagattagacgGTAAAATGAGGCGTGCAGGGTTGGGTGAAGGAGCTCCGCAGGGGAATTATGTGGCAAGCGGTTACAGCGTTTACGAGGAGGAGAACGAACAGTTACAAGAAGGTCTTAGAGCCAAAGTAAACGCACTGAAACATCTCTCAATTGACATCGGGACTGAAGTCAAATcccaaaataaaatgttatcagACATGGACTCGGACTTTGACTCAACTGGCGGTTTGCTGGGAGCCACCATGGGCAGGCTGAAGCTGTTGTCCAGAGGAAGCCAGACCAAAATCTACTGCTACATGCTGCTTTTTGCTCTCTTTGTATTCACTATTCTTTACTGGGTGATCAAACTGAGGTGATGGAAGGACTAATGAATTTGACTGCTTTCATGACGTCCTCTACCCTGCGTGCCACGTTCCACTGCATCAGACAAACCGAATCAGGCCAGTGATGCCTTTGAGATGATTAACATAAAGAGTCTTTGATGTGTTCAATATTTACCACTCAACAGTTGTGCAAAATCATGGACAGAGGTTACCAGAATTCCTCCCTGACACAGGTTAGTCATTTTAGGATGTAAATTTTTGTATTATCAGTATTCTTTGTGAGATACAAAGGCTTTAATGCAATGCCAGTGTCATTCTAGATATGCAGCTGTTTCCTAGGATTAATGATCCTAACGCCTAATGTTTTTCCACGGTTCAATGCATGCATCATCTGAGAGTGTAattgactgttgtttttttccctataaaCTGGCTGAAAACAAAGATGTtagttttatataaatgcacGGGTCTAGGATCTGCTGCAGGTCCCAGAACAGGAAATCAGTGAGAAAAATATTGTCTATTTTGTCAAGCAATTATTCATCAAGCTTGTTGGCTATGCTTGGCATAAGCAACTTATTTAGCTGCCCTTGATCTTTCAGAATAATTGTGACAAGTCTGTACTGAATGCACAAAAGCTCTTAATTATAGCGAGGACAGGACATTTCACTGTTCAAGGAAAtatgtaaacattaaaaatgttttctgagggggaaaaacaaTAGTGATATAAATGATGAGAAAATTTTCATCTTTTCTAACTTTAAGATTTTAAtcctttttctgtttaatttaagAATTTGAGTTCTGAATATGCAGAACACATCTGAAGCTTAACAGTTCTGGACTAATAATGTTGGATTTCTCACAGAATTGTGATTTGTACAGTATGTAAGAGAAAAAATGTTAGGCAATAAATGTTGAAGAAAgcaa

Function

GO: NA

KEGG:

id description
K08504 BET1; blocked early in transport 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577003.1 lncRNA upstream 43390 9174943 ~ 9181214 (+) True LOC113536151
XR_003403662.2 lncRNA upstream 43393 9174943 ~ 9181211 (+) False LOC113536151
TU403575 lncRNA upstream 47470 9157458 ~ 9177134 (+) True G340592
TU403576 lncRNA upstream 47470 9157458 ~ 9177134 (+) False G340592
TU403577 lncRNA upstream 47470 9157458 ~ 9177134 (+) False G340592
TU403683 lncRNA downstream 16841 9246479 ~ 9247048 (+) True G340687
TU403973 lncRNA downstream 328059 9557697 ~ 9565526 (+) False LOC113536134
XR_003403660.2 lncRNA downstream 328100 9557738 ~ 9560373 (+) True LOC113536134
TU404020 lncRNA downstream 398150 9627788 ~ 9669228 (+) True G340967
TU404103 lncRNA downstream 499290 9728928 ~ 9730969 (+) True G341038
XM_034298368.1 mRNA upstream 91046 9119014 ~ 9133558 (+) False sgce
XM_026929620.2 mRNA upstream 91046 9119015 ~ 9133558 (+) True sgce
XM_034298369.1 mRNA upstream 91046 9119016 ~ 9133558 (+) False sgce
XM_026929622.2 mRNA upstream 91046 9119017 ~ 9133558 (+) False sgce
XM_026930225.2 mRNA upstream 171274 9034462 ~ 9053330 (+) True pdk4
XM_026929404.2 mRNA downstream 22468 9252106 ~ 9255479 (+) True tfpi2
XM_026930171.2 mRNA downstream 34123 9263761 ~ 9315951 (+) True calcr
XM_034298534.1 mRNA downstream 351277 9580915 ~ 9594532 (+) True LOC113536235
XM_034298535.1 mRNA downstream 351277 9580915 ~ 9594532 (+) False LOC113536235
XM_034298537.1 mRNA downstream 351277 9580915 ~ 9594532 (+) False LOC113536235
TU403493 other upstream 308760 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 308760 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 939400 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2507458 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2608732 6604657 ~ 6615872 (+) False mturn
TU404551 other downstream 1244845 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2062686 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 2062686 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 2580471 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 3462387 12692025 ~ 12695512 (+) False fabp3

Expression Profile