Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU403683 |
| length | 267 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G340687 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 9246479 ~ 9247048 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577003.1 | lncRNA | upstream | 65265 | 9174943 ~ 9181214 (+) | True | LOC113536151 |
| XR_003403662.2 | lncRNA | upstream | 65268 | 9174943 ~ 9181211 (+) | False | LOC113536151 |
| TU403575 | lncRNA | upstream | 69345 | 9157458 ~ 9177134 (+) | True | G340592 |
| TU403576 | lncRNA | upstream | 69345 | 9157458 ~ 9177134 (+) | False | G340592 |
| TU403577 | lncRNA | upstream | 69345 | 9157458 ~ 9177134 (+) | False | G340592 |
| TU403973 | lncRNA | downstream | 310649 | 9557697 ~ 9565526 (+) | False | LOC113536134 |
| XR_003403660.2 | lncRNA | downstream | 310690 | 9557738 ~ 9560373 (+) | True | LOC113536134 |
| TU404020 | lncRNA | downstream | 380740 | 9627788 ~ 9669228 (+) | True | G340967 |
| TU404103 | lncRNA | downstream | 481880 | 9728928 ~ 9730969 (+) | True | G341038 |
| TU404499 | lncRNA | downstream | 946728 | 10193776 ~ 10197002 (+) | True | zgc:91910 |
| XM_026929681.2 | mRNA | upstream | 16841 | 9224604 ~ 9229638 (+) | True | bet1 |
| XM_034298368.1 | mRNA | upstream | 112921 | 9119014 ~ 9133558 (+) | False | sgce |
| XM_026929620.2 | mRNA | upstream | 112921 | 9119015 ~ 9133558 (+) | True | sgce |
| XM_034298369.1 | mRNA | upstream | 112921 | 9119016 ~ 9133558 (+) | False | sgce |
| XM_026929622.2 | mRNA | upstream | 112921 | 9119017 ~ 9133558 (+) | False | sgce |
| XM_026929404.2 | mRNA | downstream | 5058 | 9252106 ~ 9255479 (+) | True | tfpi2 |
| XM_026930171.2 | mRNA | downstream | 16713 | 9263761 ~ 9315951 (+) | True | calcr |
| XM_034298534.1 | mRNA | downstream | 333867 | 9580915 ~ 9594532 (+) | True | LOC113536235 |
| XM_034298535.1 | mRNA | downstream | 333867 | 9580915 ~ 9594532 (+) | False | LOC113536235 |
| XM_034298537.1 | mRNA | downstream | 333867 | 9580915 ~ 9594532 (+) | False | LOC113536235 |
| TU403677 | other | upstream | 17043 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU403493 | other | upstream | 330635 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | upstream | 330635 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403100 | other | upstream | 961275 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 2529333 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU404551 | other | downstream | 1227435 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 2045276 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 2045276 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 2563061 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405918 | other | downstream | 3444977 | 12692025 ~ 12695512 (+) | False | fabp3 |
