RNA id: TU403973


Basic Information

Item Value
RNA id TU403973
length 349
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id LOC113536134
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9557697 ~ 9565526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttattttattttatttttaataattatttgatagggggtattttattttgaaagaagGGTGTGCACTCTTATTAAAGGTAATAGTCACATTACAGAGAGGTACAAATCACAGCGCAATAGGAAGTCGTCCTGTTTCCTGCGGTGTCACTAGAGAGGAGAGGTAAGATCAACTGTGAAAAAGTATTCCATATGATGTTATATCTGACCATTAGTTCGAGTTATCAATAGGTTAAATGAAGTTTATTTGAGTGCTGTTAATGggtgtaaataatatataatgcgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtttgtgtataattatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403683 lncRNA upstream 310649 9246479 ~ 9247048 (+) True G340687
XR_004577003.1 lncRNA upstream 376483 9174943 ~ 9181214 (+) True LOC113536151
XR_003403662.2 lncRNA upstream 376486 9174943 ~ 9181211 (+) False LOC113536151
TU403576 lncRNA upstream 380563 9157458 ~ 9177134 (+) False G340592
TU404020 lncRNA downstream 62262 9627788 ~ 9669228 (+) True G340967
TU404103 lncRNA downstream 163402 9728928 ~ 9730969 (+) True G341038
TU404499 lncRNA downstream 628250 10193776 ~ 10197002 (+) True zgc:91910
TU404568 lncRNA downstream 832684 10398210 ~ 10398409 (+) True G341468
TU404570 lncRNA downstream 833427 10398953 ~ 10399867 (+) True G341469
XM_026930171.2 mRNA upstream 241746 9263761 ~ 9315951 (+) True calcr
XM_026929404.2 mRNA upstream 302218 9252106 ~ 9255479 (+) True tfpi2
XM_026929681.2 mRNA upstream 328059 9224604 ~ 9229638 (+) True bet1
XM_034298368.1 mRNA upstream 424139 9119014 ~ 9133558 (+) False sgce
XM_034298534.1 mRNA downstream 15389 9580915 ~ 9594532 (+) True LOC113536235
XM_034298535.1 mRNA downstream 15389 9580915 ~ 9594532 (+) False LOC113536235
XM_034298537.1 mRNA downstream 15389 9580915 ~ 9594532 (+) False LOC113536235
XM_034298538.1 mRNA downstream 15389 9580915 ~ 9594532 (+) False LOC113536235
XM_034298536.1 mRNA downstream 15389 9580915 ~ 9594532 (+) False LOC113536235
TU403677 other upstream 328261 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 641853 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 641853 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 1272493 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2840551 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 908957 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 1726798 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 1726798 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 2244583 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 3126499 12692025 ~ 12695512 (+) False fabp3

Expression Profile