Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU404103 |
| length | 678 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G341038 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 9728928 ~ 9730969 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU404020 | lncRNA | upstream | 59700 | 9627788 ~ 9669228 (+) | True | G340967 |
| TU403973 | lncRNA | upstream | 163402 | 9557697 ~ 9565526 (+) | False | LOC113536134 |
| XR_003403660.2 | lncRNA | upstream | 168555 | 9557738 ~ 9560373 (+) | True | LOC113536134 |
| TU403683 | lncRNA | upstream | 481880 | 9246479 ~ 9247048 (+) | True | G340687 |
| XR_004577003.1 | lncRNA | upstream | 547714 | 9174943 ~ 9181214 (+) | True | LOC113536151 |
| TU404499 | lncRNA | downstream | 462807 | 10193776 ~ 10197002 (+) | True | zgc:91910 |
| TU404568 | lncRNA | downstream | 667241 | 10398210 ~ 10398409 (+) | True | G341468 |
| TU404570 | lncRNA | downstream | 667984 | 10398953 ~ 10399867 (+) | True | G341469 |
| TU404547 | lncRNA | downstream | 706435 | 10437404 ~ 10458143 (+) | True | G341449 |
| XR_004577048.1 | lncRNA | downstream | 715359 | 10446328 ~ 10447955 (+) | True | LOC117595845 |
| XM_026930186.2 | mRNA | upstream | 110903 | 9604471 ~ 9618025 (+) | True | pex1 |
| XM_026930187.2 | mRNA | upstream | 110903 | 9604471 ~ 9618025 (+) | False | pex1 |
| XM_026929443.2 | mRNA | upstream | 128579 | 9597569 ~ 9600349 (+) | True | efcab1 |
| XM_034298538.1 | mRNA | upstream | 134396 | 9580915 ~ 9594532 (+) | False | LOC113536235 |
| XM_026929682.2 | mRNA | downstream | 30686 | 9761655 ~ 9779711 (+) | True | poc1bl |
| XM_026930023.2 | mRNA | downstream | 51246 | 9782215 ~ 9801084 (+) | True | galnt12 |
| XM_026930073.2 | mRNA | downstream | 73067 | 9804036 ~ 9806104 (+) | True | LOC113536234 |
| XM_026929439.2 | mRNA | downstream | 91734 | 9822703 ~ 10006532 (+) | True | gabbr2 |
| XM_034298365.1 | mRNA | downstream | 134295 | 9865264 ~ 10006532 (+) | False | gabbr2 |
| TU403677 | other | upstream | 499492 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU403493 | other | upstream | 813084 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | upstream | 813084 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403100 | other | upstream | 1443724 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 3011782 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU404551 | other | downstream | 743514 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 1561355 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 1561355 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 2079140 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405918 | other | downstream | 2961056 | 12692025 ~ 12695512 (+) | False | fabp3 |
