RNA id: TU404546


Basic Information

Item Value
RNA id TU404546
length 1499
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC113536353
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10449436 ~ 10454792 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaattagagcggagactgcgagccaggccttctcgtccaacatcagtgtctgacctcacaaatgcgcttctagaagaatggtcaaaaattatCCTCTTGAGACCCGGCAATTCATTTTTGTCCACTGTAGTGGACATTAAGTTTTTGCTCATACCTCTCATACTACGCATTTCACACTATTAGTTCATATTGTaccttaaaaaaagacatttggcCCTTCAAAATGATGTCACATGCGAGGGGGTGTGGCCTTGCCAACTTCCTGATTTTGTcttttcaaaatggctgccattggGACAAGCACATTttatggaagaaagaaagGACTGAattgctttctcactgcaacCGAACCGCGCTAGAGTTCGACTGGAACCGTACGGGTTGTTGTGCTCCTGTGTTCTTACCTGCACCAAAGAGGAAAATGCACCAGGGTTCgattcaaatggactaaacacTCTATGAACACTGAAAGCACCCTTAGATACACCCTCACCGTTTTACTCACCGTCCCAATCCTGCTACACAGTGCACGGCAATGCAGCATCCTGGTTCATCGCGGAACTTGGTCTTCACCAAATTTAGCCAATCATCAACAATCTGGGTGGGGGGTGGAGCTCCATCATCAAAGGGCCAGTcctgtatggaaaaaaaacacacaacaaaacatgCAAGCAAATATGAATAAGTCATGTCTATTTCATAGTGCATACCCTTTCTGAAAACACCATGGAATTCAATACAGCTGAGGTTTGCATGTGTTCAATGGCAAGTCTGAGCTATGAAGCACTTACTACTAAACTAATCTGAAGAGCTACAGAGAGAGGCCCAAGGGTCATCTCTGAGCTAGAACGCATAGCGAGAGCATGGAATTCTCACAATCTATTCTTGACCACAGAGATCTGCCAACCTCCTCCCAGCCAGAGTAACAAAGAAGAGTAACAAAGATGAGAATGCAGGAGAGACAGTTTGGGCCAAAAAGGGAGGAGGTAGTCCAGAGATTAAAAGATAATCAGGCTGAGAAGATGAGATCAGTAAGGAAGGATGGCAAGGATGGGAGGAGAAAGGAAGACTGGGAGATAAAGTCACGGGGCAGTGAGTGGgaaatggaaacaaaaaagGAGACTGGGTAAGCGCTCTGAGGCAGGACGTATCGAGTTCACTGAAATGACGCACAAGTCCAATGTCATCTGGAGGGAGTAGTTGGGTTTTCTGACAAATTCATTGTCGAAACGGGGCCTAGCAGAGAAATCAATTATTGCAACAATGagtgagagaagaaagaaagaacaaaagaaaagagactGGGAAGGCTGGCTGCCCTACTATGTTCCCACTGAACTGAAATTTCTGCTCACTACCGGCTAAAACAGGTTCTCTCTCTTTACTTTACACATACCTTCCCTCGGTCTCTGcatactctctttctctctctctctctctcgctctctttctctctctgtctctgtctcacacacacgctgtgaAACACactctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577048.1 lncRNA upstream 1481 10446328 ~ 10447955 (+) True LOC117595845
XR_004577049.1 lncRNA upstream 1481 10446328 ~ 10447955 (+) False LOC117595845
TU404570 lncRNA upstream 49569 10398953 ~ 10399867 (+) True G341469
TU404568 lncRNA upstream 51027 10398210 ~ 10398409 (+) True G341468
TU404499 lncRNA upstream 252434 10193776 ~ 10197002 (+) True zgc:91910
TU405048 lncRNA downstream 863963 11318755 ~ 11319077 (+) True G341894
TU405046 lncRNA downstream 879527 11334319 ~ 11336268 (+) False dlgap3
TU405043 lncRNA downstream 930244 11385036 ~ 11473979 (+) False G341890
TU405042 lncRNA downstream 1004295 11459087 ~ 11473979 (+) True G341890
TU405227 lncRNA downstream 1128850 11583642 ~ 11583855 (+) True G342067
XM_026929413.2 mRNA upstream 252736 10193747 ~ 10196700 (+) False zgc:91910
XM_026930175.2 mRNA upstream 259120 10187693 ~ 10190316 (+) True wdyhv1
XM_026930176.2 mRNA upstream 259120 10187693 ~ 10190316 (+) False wdyhv1
XM_026930122.2 mRNA upstream 295245 10147649 ~ 10154191 (+) True ccn4a
XM_026930031.2 mRNA upstream 401549 10042424 ~ 10047887 (+) True abitram
XM_026929421.2 mRNA downstream 142624 10597416 ~ 10620173 (+) True angpt2b
XM_026930135.2 mRNA downstream 602313 11057105 ~ 11078437 (+) True LOC113536281
XM_034298839.1 mRNA downstream 821034 11275826 ~ 11283228 (+) True cx30.9
XM_026930215.2 mRNA downstream 825754 11280546 ~ 11283228 (+) False cx30.9
XM_026930214.2 mRNA downstream 829741 11284533 ~ 11291582 (+) True pef1
TU403677 other upstream 1220000 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 1533592 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 1533592 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 2164232 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 3732290 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 19691 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 837532 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 837532 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 1355317 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 2237233 12692025 ~ 12695512 (+) False fabp3

Expression Profile