Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403676.2 |
| length | 446 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 3 |
| gene id | LOC113536353 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 10449436 ~ 10454792 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577048.1 | lncRNA | upstream | 1754 | 10446328 ~ 10447955 (+) | True | LOC117595845 |
| XR_004577049.1 | lncRNA | upstream | 1754 | 10446328 ~ 10447955 (+) | False | LOC117595845 |
| TU404570 | lncRNA | upstream | 49842 | 10398953 ~ 10399867 (+) | True | G341469 |
| TU404568 | lncRNA | upstream | 51300 | 10398210 ~ 10398409 (+) | True | G341468 |
| TU404499 | lncRNA | upstream | 252707 | 10193776 ~ 10197002 (+) | True | zgc:91910 |
| TU405048 | lncRNA | downstream | 864958 | 11318755 ~ 11319077 (+) | True | G341894 |
| TU405046 | lncRNA | downstream | 880522 | 11334319 ~ 11336268 (+) | False | dlgap3 |
| TU405043 | lncRNA | downstream | 931239 | 11385036 ~ 11473979 (+) | False | G341890 |
| TU405042 | lncRNA | downstream | 1005290 | 11459087 ~ 11473979 (+) | True | G341890 |
| TU405227 | lncRNA | downstream | 1129845 | 11583642 ~ 11583855 (+) | True | G342067 |
| XM_026929413.2 | mRNA | upstream | 253009 | 10193747 ~ 10196700 (+) | False | zgc:91910 |
| XM_026930175.2 | mRNA | upstream | 259393 | 10187693 ~ 10190316 (+) | True | wdyhv1 |
| XM_026930176.2 | mRNA | upstream | 259393 | 10187693 ~ 10190316 (+) | False | wdyhv1 |
| XM_026930122.2 | mRNA | upstream | 295518 | 10147649 ~ 10154191 (+) | True | ccn4a |
| XM_026930031.2 | mRNA | upstream | 401822 | 10042424 ~ 10047887 (+) | True | abitram |
| XM_026929421.2 | mRNA | downstream | 143619 | 10597416 ~ 10620173 (+) | True | angpt2b |
| XM_026930135.2 | mRNA | downstream | 603308 | 11057105 ~ 11078437 (+) | True | LOC113536281 |
| XM_034298839.1 | mRNA | downstream | 822029 | 11275826 ~ 11283228 (+) | True | cx30.9 |
| XM_026930215.2 | mRNA | downstream | 826749 | 11280546 ~ 11283228 (+) | False | cx30.9 |
| XM_026930214.2 | mRNA | downstream | 830736 | 11284533 ~ 11291582 (+) | True | pef1 |
| TU403677 | other | upstream | 1220273 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU403493 | other | upstream | 1533865 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | upstream | 1533865 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403100 | other | upstream | 2164505 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 3732563 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU404551 | other | downstream | 20686 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 838527 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 838527 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 1356312 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405918 | other | downstream | 2238228 | 12692025 ~ 12695512 (+) | False | fabp3 |
