RNA id: TU404568


Basic Information

Item Value
RNA id TU404568
length 200
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G341468
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10398210 ~ 10398409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caatagtgcctgtttaattaaaatcccaggattatatcaatgcactccttctaatatgttatcagtTCTGTAATAACTCATATGTAGGGAGTTATATGGTGGgcactctacataatctaaggctaagaagtggatttaaaaatgttaacaaaaaaaaaaaagtgtataattgttgatgtggtgaagctttctataaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404499 lncRNA upstream 201208 10193776 ~ 10197002 (+) True zgc:91910
TU404103 lncRNA upstream 667241 9728928 ~ 9730969 (+) True G341038
TU404020 lncRNA upstream 728982 9627788 ~ 9669228 (+) True G340967
TU403973 lncRNA upstream 832684 9557697 ~ 9565526 (+) False LOC113536134
XR_003403660.2 lncRNA upstream 837837 9557738 ~ 9560373 (+) True LOC113536134
TU404570 lncRNA downstream 544 10398953 ~ 10399867 (+) True G341469
TU404547 lncRNA downstream 38995 10437404 ~ 10458143 (+) True G341449
XR_004577048.1 lncRNA downstream 47919 10446328 ~ 10447955 (+) True LOC117595845
XR_004577049.1 lncRNA downstream 47919 10446328 ~ 10447955 (+) False LOC117595845
TU404546 lncRNA downstream 51027 10449436 ~ 10454792 (+) True LOC113536353
XM_026929413.2 mRNA upstream 201510 10193747 ~ 10196700 (+) False zgc:91910
XM_026930175.2 mRNA upstream 207894 10187693 ~ 10190316 (+) True wdyhv1
XM_026930176.2 mRNA upstream 207894 10187693 ~ 10190316 (+) False wdyhv1
XM_026930122.2 mRNA upstream 244019 10147649 ~ 10154191 (+) True ccn4a
XM_026930031.2 mRNA upstream 350323 10042424 ~ 10047887 (+) True abitram
XM_026929421.2 mRNA downstream 199007 10597416 ~ 10620173 (+) True angpt2b
XM_026930135.2 mRNA downstream 658696 11057105 ~ 11078437 (+) True LOC113536281
XM_034298839.1 mRNA downstream 877417 11275826 ~ 11283228 (+) True cx30.9
XM_026930215.2 mRNA downstream 882137 11280546 ~ 11283228 (+) False cx30.9
XM_026930214.2 mRNA downstream 886124 11284533 ~ 11291582 (+) True pef1
TU403677 other upstream 1168774 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 1482366 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 1482366 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 2113006 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 3681064 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 76074 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 893915 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 893915 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 1411700 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 2293616 12692025 ~ 12695512 (+) False fabp3

Expression Profile