RNA id: XM_026929427.2


Basic Information

Item Value
RNA id XM_026929427.2
length 1353
RNA type mRNA
GC content 0.47
exon number 2
gene id smim12
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11292291 ~ 11294356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATACGTCGCAATTACGTCACGATAGAGGCGGTACCTAAAAGCAGGAAGTGGATTTTTGATGGTACTGCCTGAAAGAATGAAGGAATTGCTCTGAAGCAACACCAGTAGGTGAAGTAATTCACGagcGTTTTGCATTTGGGTCGTTTGTGCCACCATGTGGCCGGTGGTGTGGACCGCTATGCGCACCTATGCGCCCTACGTGACCTTCCCTGTGGCCTTCGTAGTGGGCGCGGTGGGCTACCACCTGGAGTGGTTCATCCGGGGACCTCCCAAAACCCCGCGAGAAGAGAAGGGTATCGCGGAGCTTCGCGAGGACCGGAAACTCGAGGAGCTGGTGGGCCGAGACAGCACGCAAGTCCTCAGTCTGAAGGACAAACTGGAGTTCACCCCCAGGGCAGTACTGGAAAAGAACCGGCCTGAGAAGAGCTAGCTAGAGCCATGTCAGATTTCCCAGAGGGATCACATCACTCATGCTAGCTTATATGCTGTAGAACATATCATTGTGTACAACATGAGTTCCTGATTCTACATCACTCTACGATCCAACACATCACAGGTTTCCTTGCACATTTGAGTGATTTTTCCTTGCTCTAACATACCTGATCCAGTAATCAGCTACTTAACAGGCTTTCCTGAAttaaagtgggtgtgttagagcaaggAAAGCACTAAACTGTCCAGGACAGGGGTGTGCAGTCTTATctgcaaagggccagtgtgggtgcaggttttcattccaatcaagcaggaacCACTACTGATTCCACCTGATTAATCagctgatcttggctttcaatagactcgGGTCTGGCTTCTGCttagttggaatgaaaaccttcACCCACCCTGGCCCTTTCCAGATAAGACTGGACACTCCTGGTCCACGACAAGGACTGCGAGCCTGTGCCTGGCATGATTATTCCCTCTTCCTTAACGCTCACTCACTGGAAAAAGACTTGTGAATGTACTTTGTGGCTTAATGTTCAAGTTCCTCAGGCACATGGACACATGACTGTTTATCCGACATTGGAGAAACATTCAGAAGCTTCTGTATATCTCCATTTTCACTGATTATCATAAGACTGCGCTTGAAAGAATGGCAAGAATTGCTTAGATTAAATGTTTTGTGAGAAGTGCCCTTATTACTGTCCTGTATTAGTGAgagcaaacaataaaacatcacTTTGCCCCATTCGTCACTTCTGCCCATGCAAGAACATGATACATCACCTCATTCTAGaagttgtgtgtgaaagcttTAGCCATCAACTGCGACTTTATTCTAGTGTTCACATATTAGagtaaaggaaaactccaccctggaagacaataaatgtttattttgaaatatt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404547 lncRNA upstream 834148 10437404 ~ 10458143 (+) True G341449
TU404546 lncRNA upstream 837499 10449436 ~ 10454792 (+) True LOC113536353
XR_003403676.2 lncRNA upstream 838494 10449709 ~ 10453797 (+) False LOC113536353
TU404543 lncRNA upstream 840729 10450465 ~ 10451562 (+) True G341445
XR_004577048.1 lncRNA upstream 844336 10446328 ~ 10447955 (+) True LOC117595845
TU405048 lncRNA downstream 24696 11318755 ~ 11319077 (+) True G341894
TU405046 lncRNA downstream 40260 11334319 ~ 11336268 (+) False dlgap3
TU405043 lncRNA downstream 90977 11385036 ~ 11473979 (+) False G341890
TU405042 lncRNA downstream 165028 11459087 ~ 11473979 (+) True G341890
TU405227 lncRNA downstream 289583 11583642 ~ 11583855 (+) True G342067
XM_026930214.2 mRNA upstream 709 11284533 ~ 11291582 (+) True pef1
XM_034298839.1 mRNA upstream 9063 11275826 ~ 11283228 (+) True cx30.9
XM_026930215.2 mRNA upstream 9063 11280546 ~ 11283228 (+) False cx30.9
XM_026930135.2 mRNA upstream 213854 11057105 ~ 11078437 (+) True LOC113536281
XM_026929421.2 mRNA upstream 672118 10597416 ~ 10620173 (+) True angpt2b
XM_026930020.2 mRNA downstream 20471 11314530 ~ 11467459 (+) False dlgap3
XM_034298527.1 mRNA downstream 40269 11334328 ~ 11473323 (+) False dlgap3
XM_026930021.2 mRNA downstream 40269 11334328 ~ 11467459 (+) False dlgap3
XM_034298526.1 mRNA downstream 153083 11447142 ~ 11473323 (+) True dlgap3
XM_026929711.2 mRNA downstream 247444 11541503 ~ 11569943 (+) True fam49al
TU404551 other upstream 810321 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2062855 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 2376447 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 2376447 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 3007087 8282960 ~ 8285204 (+) True G340208
XR_004577055.1 other downstream 516050 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 1397966 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 1491778 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 1610564 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 1783111 13077170 ~ 13081229 (+) True G342718

Expression Profile