RNA id: TU405046


Basic Information

Item Value
RNA id TU405046
length 1818
lncRNA type sense_over
GC content 0.39
exon number 2
gene id dlgap3
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11314530 ~ 11473323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatcagtaatcGGGTGACTGTGAACGTGACAatgggtgtgagtgtgagtgacgAGAGTTGTACTTCATGTTGGCCATGTTTTGTAGGCCATTGTGTTCTCTGCGAAATTGAGTCCGAAGCCTGACAGGACGACTCAAAgctttaaaatcttttcctgacaaagTGCATGCTCCCAACATGAAGAATGACCAATATGGGGGATCGAGAGGTGAAGCTACTGTCTGACCAGCCTTATCTAATGTGCATCCTCCAGCTCCAATATTGACCTACTGTGCAAACTCAGTCAAGATTCTGACTTTCAATCCAACCACATTTTGGCTTCAAAACATAATGGGAGTCACTGGCGCCATGTTGTCcacccatatatacagtcactggtcTACCTTGGTGTATAAGTGTGATATATTAGGCAcaaaaattctgtttttcaaAGTTGTCCAATATAGGTATGATCCAAACCCCTGGCTCTCAAATTTATTTAACCACTGAGACCAGATTGCAGGCAATAACACATTAGACAGactggtgtgtgttggagaggaGACATGGTCAGTGTCACAGAGAGGGCAGAGTTCACACAGAGTTGATGTTAGTGGTTGTGGACAGTGTGTTATGTCATTCAGTCAAAGTTGAGCCAGTGCTTATCTGGAGATATCAAATATCAAGATGTGTAACTGTTGTGATTTCATGAAGCTAATTCCTCAGTATAGTTTTACTTGTTTTACTGATTTTGTAGTTTTACTGATTTTGTAGACGGTTGTGTACCGGTTTGGTGGTAGACTGGTGGATTGGATCCTCTGTGAACAACATCTCTTCTGTGCAGAAGTTAACCTCTAAACAAGcgttctcatttttattttgctctgtgGATAGGCTGTTGGCTGTAGTTGAGTTAGCTCATTTGATCCACTTGTTTGTGTACCTTTAGCgttctgcagtgtgtgagagtaCTGGCAAAACTCTGTACACATTATTTACTCAGAGAACAGCAGCTGGGCTGCAGGGCAATTCGACCTGATCTCATACATTTCTCTGCATTTATCCAGCACCTGGAGGGAGAATGCAGAGCTCATAATGATGCCCCTCACAGTAATGCAGAAATGTGATATATAGAAGTTAAAGTTAATGCAGACAGTTGGGTTTATTGTTGTAGGAGTTTGGAATATTGTGTAATTCACGTCGATTTTGcatttaatccacgtttcttaGACGTTAACAGTAGGTGCTGAAATAGTTTAACTTCtgctctcttcttttctctccagCTTGCTGATAATTTATCACCCTCAATTCCATCAGAGGCTGTTAAGCAGTGCTTCTTGCGGAGATGTGTATAGATAAGCCGTCTCCTGATGAGCGCCTAAGGCATGTTTATGTTTGTGAACGTTTGTGAGCATGCAAACATAACCTGCTTTCTCCCCGAAAGAGCTTTACAGCATGTAGATCACACCGTCGGGATTTCCTTCTGTAACTAGAAGTCAAATAAAGATGCAAAACATTTTCCGATATTCTCCATTAGTGTTGATTACTCCATTATTATGGATGAATTAACAATAAGTTTCATATActgtgtgtaaacttttaaatCCAATTGTTTATAATGACTGCACTATATTAATTAAAACTGGGTATTACCGGTGTTTCCATGCTTATTTAAGAATAGGGTTAAATTGGAATTTAGGATGTTAGGAAGGAAGCCCTACTTTTTGAGAATAGTACAATTCAGTTTAAGCAATTCTCAACACTGATATcatgaaaatgaaatctttttgtgtatatactctatatatcTAATTTAACTAACTATGACTGAATGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405048 lncRNA upstream 15242 11318755 ~ 11319077 (+) True G341894
TU404547 lncRNA upstream 876176 10437404 ~ 10458143 (+) True G341449
TU404546 lncRNA upstream 879527 10449436 ~ 10454792 (+) True LOC113536353
XR_003403676.2 lncRNA upstream 880522 10449709 ~ 10453797 (+) False LOC113536353
TU404543 lncRNA upstream 882757 10450465 ~ 10451562 (+) True G341445
TU405043 lncRNA downstream 48768 11385036 ~ 11473979 (+) False G341890
TU405042 lncRNA downstream 122819 11459087 ~ 11473979 (+) True G341890
TU405227 lncRNA downstream 247374 11583642 ~ 11583855 (+) True G342067
TU405239 lncRNA downstream 252750 11589018 ~ 11589225 (+) True G342079
TU405371 lncRNA downstream 445998 11782266 ~ 11784980 (+) True G342190
XM_026929427.2 mRNA upstream 40260 11292291 ~ 11294059 (+) False smim12
XM_026929428.2 mRNA upstream 40260 11292306 ~ 11294059 (+) False smim12
XM_034298335.1 mRNA upstream 40260 11292454 ~ 11294059 (+) False smim12
XM_026930214.2 mRNA upstream 42737 11284533 ~ 11291582 (+) True pef1
XM_026930215.2 mRNA upstream 51091 11280546 ~ 11283228 (+) False cx30.9
XM_034298526.1 mRNA downstream 110874 11447142 ~ 11473323 (+) True dlgap3
XM_026929711.2 mRNA downstream 205235 11541503 ~ 11569943 (+) True fam49al
XM_026929626.2 mRNA downstream 354169 11690437 ~ 11705117 (+) True mfsd2ab
XM_026929625.2 mRNA downstream 370390 11706658 ~ 11715821 (+) True yars1
XM_026929909.2 mRNA downstream 432702 11768970 ~ 11773563 (+) True sync
TU405031 other upstream 39963 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 40289 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 852349 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2104883 9224640 ~ 9229436 (+) False bet1
TU403492 other upstream 2418475 8912973 ~ 8915844 (+) False sem1
XR_004577055.1 other downstream 473841 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 1355757 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 1449569 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 1568355 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 1740902 13077170 ~ 13081229 (+) True G342718

Expression Profile