RNA id: XM_026930020.2


Basic Information

Item Value
RNA id XM_026930020.2
length 3608
RNA type mRNA
GC content 0.57
exon number 13
gene id dlgap3
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11314530 ~ 11473323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGAGCGCGCGCGGAACCTCACAAGCAGCGGCACACAACAGACCTGCAGCGAGCTTTGTTCCTCTCAGCGGATTTCTGTACTGCTGAAAAGACGAGCCTGCTGCATACAGGAATACTGACTGAACCGTTCCCGGTGCCAGGGGATTCAAGGCTAACCTGTGAACTCCACGGTAAGGGTTCCTGTTCTCAAAGTAGGGTTCCTGTTACCAAAAGAGGGACATAAACCCAGGGCATCTGTGATATTTTGATGAACTGCAAAGGAGCACCGTTACCTGGaTTCCCGTAAGTGAATTCCAACTGCAGGAGCATTGGTCAGTCTTCAGAGAAGAGTCTTTCCCCTACTGCTGATAATGGAACTCAGTTTGCAGATGAGGAAGCACTGACTCCAGCGCAGCCCTGTCGCGCCCACAGCGCCCGCTCTCGGCCCGGGCGGCCCACCATGGCCCAGCTATGAAGGGCTACCAGGTGAGCCGCAGCCTGTCACAACACTCATCCGGGCCATGCCACTGTACACCTGAGGACTTTGAGGCCACGCGTGACTACTTACGCCATGCAGACCACTCGTACTACCCACCTGGTGGACCACCTGAGCCCCTGGCACTGCCCCCTTCTGGAGGAGGCACTTTCCCACGCTCTCATTCCACTCAGCAGCAGCCGTTTGACTCATGCGAAGAATGCTTGTCTTCGGCTGGGCATGGACACGGGCATGGACATGGGCATGGACACGGGCACCCAAAGATGCACCGCATCCCTCCTAACCTGCTGGATCAGTTTGAGAAGCAACTACCCTTGCACCCAGATGGCTTCCATACTCTACAGTACCAGCGCTCAGCCAGTGGGGAGCAGCGCAGCGAGAGTCCCAGCCGCATCCGTCACCTGGTGAACTCCGTCCAGCGCCTGTTCGCCAAGTCACATTCACTCGAGGCACCATCCAAGCGTGAGTTCAATGGATGCAAAGATCGCGACCGAGAACGAGGCCAGCGCAGTGGAGGTGAAGAAGGCACAGGGCACCACCACCCAGGTTCACATCAGTCACGCTCAACCCGCCGCAACAAGAGTCGGGAGCGCAGCAAGAGCGGAGACTCGCGCCATGATTCCCGGCATTCCTCACGCCACCGCAGCAAGACAGCTGGCTGGTGGAGCTCTGATGACAACCTGGATAGTGACAGTAGCTTCCTGGTGGCTGGAGGCAGGGGGGCAGGACGGGGATACCCACCAGGTCACGAAACCCTGGACGCAGCCATCCAGGAGCTAACCTTGAAGAAGGGAAGAAGGGAAGGTCCTGCTCCTGGAGAGTGCCTAGCATGCAGCACCATGGGCAGGGTAGGAGATAGTGGGCATTCGCTTAAGAGGAGCACCTGGTCAGCCATGACAGTCAACCAAGCCAGAGAAGCATATCCTGCCTCTCGGGGAGGAGGACCAGGTTACGATAAGGCTCTGGTACCTCTGGATGCTAAGTTGAAGGAGCGTAATCTCCATTACCTACAGGTTCCTTCTGATGAGTGGGGTGGAGGGGGAGTGTCAGAAAGCGGAGGAGAGATCCCGTGCAGACGCATGCGCAGCGGCAGCTACATTAAGGCCATGGGTGATGATGACAGTGCAGACTCAGACACCAGCCCCAAAACCTCACCAAAACGTTCACTCATTGCTCAGAGAGATGCTTTCCGGCGTTCCATCAGCATGGACCAGCGCTCTTCTACAACCAAGTACTCGTGTAAACAGTGTACAGATTCCTATTCAAACAGCCGTACCACACCGAAAGGACATGCACGCTCTCGGAGCTACACACGCTCCCTGACCAGCTCACAGCTGGGGGACACGCTGAATCGTCAGTTCgagtcagtgtgtgagagcATGTTTGGAGAGATAGAGTCTCAGGCTGTGGAGGCCTTGGATCTGCCCGGCTGCTTTCGTACACGCAGCCATAGCTACGTGCGTGCCATCCAAGCAGGCTGCTCCCAAGACGACGACTGCCTGTCCGTCTTCTCCATGTCCGGCCCTCAGGGGAGTGTCAAGGGTGGAGCAGTGTTCCCGTATAGGAAAGGCCCGCCTCCACTTCCTCCACGCATGTCCAAGCCGATGATctcaataacagcacaaagcAGTACTGAGTCCACTCAGGATGCCTACTTCCAGAGTCGGCCCAAACAGCACAGTAATTCTGTGGACCTGAGCGAGAGCTCCAGAGGGGGGTACTACCCAAGTGGGGGTGCAATACGCATCAGACAGAGCAGCAACTCCACAGAGAGCGTAAGCATGGATGGTCGAGCCTTGAGGGACTCCGGCTATGTGGGAGGGACAGGAGCCATGAGGCCCAAGCACAGCGCCTCAGCCGAAAACCTGCTAGAAGGGCCAAGGGGGCTGAGGGAGCGTGGTGGAGGCAGCCTGGGCAAATCTGCATCCCTTCCTCAGACCAGCATCATGTTGAGCAAGACCGTTAAGAGCATGGAGGAGCAGAAGCAGGATGGCAAAGGGCGCAAGTGGAGACCCTCTATAGCTGTTCAGGTGGATAGCTCTGAGACTTTGTCAGACTCAGATACAGAGGGCAAAGCACTGAGAGAAGTGCACTCCGTTGGAGTCCAAGTGGAGGATGATAAGAGACGAGCACGATTCAAACGCTCCAACAGTGTGACAGCAAGTGTGCAGGCTGATCTGGAGATGGAGGGTTTCGGGGTTCTGAGTGTGCCAACACAGGACAAGGGGCTGCAATTCGGCTGCTCCTTCCAGCGCCACTCCTCAGAGCCTGAGTCAGAATATCGCTCCACCGTGCACACACAGGGCCAGTGGGCATACCGGGACCACTACCATGGCGCCTACTCCACTGAGCCCTGTGCTCTGGAGCTGAGGgctctgcctcacacacacactgagcgaGCAGTGGCAAGTTGGCATGAAGGCCCACGCAGCTTGCCTGACTCAGGCCGAGCTTCACCATGCCTCCGAGACGGAGAGTTCTTCCTCCGCCTGCTGCAAACTGAGGTCgagaggatggagggatggtgCCAAAGCATGGAACGAGAGGCAGAGGAGAATGAGCTGCCAGATGATGTGCTGGAGCTGATCAGAGCAGCAGTGGGCAGTGCACAGATGTTAATGTCCCAGAAGGTGCAGCAGTTCTTCCGCATGTGCCAGCAAAGCGTGGATCCCACGGCATACCCCCAGCCCACCACTCAGGACCTGGCTGGTTTCTGGGACCTGCTGCAGTTGGCCATTGAGGAAGTGCGTGTGAAGTTTCAAGACCTGCAGCGGATCAAGGAATCAGGCTGGAGGCTGCCTCCTGAGAAGAAGGAGGAGACAAAGCTTCCTCCTCCGTTACCAAAGAAGCCAGCGGGTGGAGTGACTGGGAGTCTGCGGGCAGAAAGCATGGCAGAGGCAGGAGTAGGAAGCACTGGTGGTACGCTAATGGTCTCTCGCGGTCGTAGTATGCCCATACCCTTGCCAATGAGGGAGAAATCCCAAGATTTAGGCGATCGGCAGAGGCTGGAAGCAAGGCGGCGGCTCCTCCAAGCAGGTCCCAAGCGAGCTGCTTCTTTCCGTCAGAATTCGGCCACAGAGAGCGGGGATAGCATCGAGATCTACATCCCTGAGGCCCAGACCAGACTGTGA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404547 lncRNA upstream 856387 10437404 ~ 10458143 (+) True G341449
TU404546 lncRNA upstream 859738 10449436 ~ 10454792 (+) True LOC113536353
XR_003403676.2 lncRNA upstream 860733 10449709 ~ 10453797 (+) False LOC113536353
TU404543 lncRNA upstream 862968 10450465 ~ 10451562 (+) True G341445
XR_004577048.1 lncRNA upstream 866575 10446328 ~ 10447955 (+) True LOC117595845
TU405227 lncRNA downstream 116183 11583642 ~ 11583855 (+) True G342067
TU405239 lncRNA downstream 121559 11589018 ~ 11589225 (+) True G342079
TU405371 lncRNA downstream 314807 11782266 ~ 11784980 (+) True G342190
TU405369 lncRNA downstream 319614 11787073 ~ 11797795 (+) False G342189
TU405370 lncRNA downstream 320287 11787746 ~ 11792642 (+) True G342189
XM_026929427.2 mRNA upstream 20471 11292291 ~ 11294059 (+) False smim12
XM_026929428.2 mRNA upstream 20471 11292306 ~ 11294059 (+) False smim12
XM_034298335.1 mRNA upstream 20471 11292454 ~ 11294059 (+) False smim12
XM_026930214.2 mRNA upstream 22948 11284533 ~ 11291582 (+) True pef1
XM_034298839.1 mRNA upstream 31302 11275826 ~ 11283228 (+) True cx30.9
XM_026929711.2 mRNA downstream 74044 11541503 ~ 11569943 (+) True fam49al
XM_026929626.2 mRNA downstream 222978 11690437 ~ 11705117 (+) True mfsd2ab
XM_026929625.2 mRNA downstream 239199 11706658 ~ 11715821 (+) True yars1
XM_026929909.2 mRNA downstream 301511 11768970 ~ 11773563 (+) True sync
XM_026930076.2 mRNA downstream 330597 11798056 ~ 11806421 (+) True LOC113536236
TU405031 other upstream 20174 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 20500 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 832560 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2085094 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 2398686 8912928 ~ 8915844 (+) True sem1
XR_004577055.1 other downstream 342650 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 1224566 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 1318378 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 1437164 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 1609711 13077170 ~ 13081229 (+) True G342718

Expression Profile