Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU405227 |
| length | 214 |
| lncRNA type | inter_gene |
| GC content | 0.32 |
| exon number | 1 |
| gene id | G342067 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 11583642 ~ 11583855 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU405043 | lncRNA | upstream | 109663 | 11385036 ~ 11473979 (+) | False | G341890 |
| TU405042 | lncRNA | upstream | 109663 | 11459087 ~ 11473979 (+) | True | G341890 |
| TU405046 | lncRNA | upstream | 247374 | 11334319 ~ 11336268 (+) | False | dlgap3 |
| TU405048 | lncRNA | upstream | 264565 | 11318755 ~ 11319077 (+) | True | G341894 |
| TU404546 | lncRNA | upstream | 1128850 | 10449436 ~ 10454792 (+) | True | LOC113536353 |
| TU405239 | lncRNA | downstream | 5163 | 11589018 ~ 11589225 (+) | True | G342079 |
| TU405371 | lncRNA | downstream | 198411 | 11782266 ~ 11784980 (+) | True | G342190 |
| TU405369 | lncRNA | downstream | 203218 | 11787073 ~ 11797795 (+) | False | G342189 |
| TU405370 | lncRNA | downstream | 203891 | 11787746 ~ 11792642 (+) | True | G342189 |
| TU405392 | lncRNA | downstream | 279391 | 11863246 ~ 11930057 (+) | True | G342208 |
| XM_026929711.2 | mRNA | upstream | 13699 | 11541503 ~ 11569943 (+) | True | fam49al |
| XM_034298527.1 | mRNA | upstream | 110319 | 11334328 ~ 11473323 (+) | False | dlgap3 |
| XM_034298526.1 | mRNA | upstream | 110319 | 11447142 ~ 11473323 (+) | True | dlgap3 |
| XM_026930020.2 | mRNA | upstream | 116183 | 11314530 ~ 11467459 (+) | False | dlgap3 |
| XM_026930021.2 | mRNA | upstream | 116183 | 11334328 ~ 11467459 (+) | False | dlgap3 |
| XM_026929626.2 | mRNA | downstream | 106582 | 11690437 ~ 11705117 (+) | True | mfsd2ab |
| XM_026929625.2 | mRNA | downstream | 122803 | 11706658 ~ 11715821 (+) | True | yars1 |
| XM_026929909.2 | mRNA | downstream | 185115 | 11768970 ~ 11773563 (+) | True | sync |
| XM_026930076.2 | mRNA | downstream | 214201 | 11798056 ~ 11806421 (+) | True | LOC113536236 |
| XM_026930095.2 | mRNA | downstream | 226254 | 11810109 ~ 11815273 (+) | True | sostdc1b |
| TU405031 | other | upstream | 289286 | 11292324 ~ 11294356 (+) | True | smim12 |
| TU405030 | other | upstream | 289612 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU404551 | other | upstream | 1101672 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU403677 | other | upstream | 2354206 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU403492 | other | upstream | 2667798 | 8912973 ~ 8915844 (+) | False | sem1 |
| XR_004577055.1 | other | downstream | 226254 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405918 | other | downstream | 1108170 | 12692025 ~ 12695512 (+) | False | fabp3 |
| XR_003403671.2 | other | downstream | 1201982 | 12785837 ~ 12792473 (+) | True | LOC113536228 |
| XR_004577016.1 | other | downstream | 1320768 | 12904623 ~ 12951963 (+) | False | si:ch211-199g17.2 |
| TU406031 | other | downstream | 1493315 | 13077170 ~ 13081229 (+) | True | G342718 |
