Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU405371 |
| length | 1028 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 5 |
| gene id | G342190 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 11782266 ~ 11784980 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU405239 | lncRNA | upstream | 193041 | 11589018 ~ 11589225 (+) | True | G342079 |
| TU405227 | lncRNA | upstream | 198411 | 11583642 ~ 11583855 (+) | True | G342067 |
| TU405043 | lncRNA | upstream | 308287 | 11385036 ~ 11473979 (+) | False | G341890 |
| TU405042 | lncRNA | upstream | 308287 | 11459087 ~ 11473979 (+) | True | G341890 |
| TU405046 | lncRNA | upstream | 445998 | 11334319 ~ 11336268 (+) | False | dlgap3 |
| TU405369 | lncRNA | downstream | 2093 | 11787073 ~ 11797795 (+) | False | G342189 |
| TU405370 | lncRNA | downstream | 2766 | 11787746 ~ 11792642 (+) | True | G342189 |
| TU405392 | lncRNA | downstream | 78266 | 11863246 ~ 11930057 (+) | True | G342208 |
| TU405533 | lncRNA | downstream | 490766 | 12275746 ~ 12275952 (+) | True | G342333 |
| TU405730 | lncRNA | downstream | 602804 | 12387784 ~ 12388606 (+) | False | G342496 |
| XM_026929909.2 | mRNA | upstream | 8703 | 11768970 ~ 11773563 (+) | True | sync |
| XM_026929625.2 | mRNA | upstream | 66445 | 11706658 ~ 11715821 (+) | True | yars1 |
| XM_026929626.2 | mRNA | upstream | 77149 | 11690437 ~ 11705117 (+) | True | mfsd2ab |
| XM_026929711.2 | mRNA | upstream | 212323 | 11541503 ~ 11569943 (+) | True | fam49al |
| XM_034298527.1 | mRNA | upstream | 308943 | 11334328 ~ 11473323 (+) | False | dlgap3 |
| XM_026930076.2 | mRNA | downstream | 13076 | 11798056 ~ 11806421 (+) | True | LOC113536236 |
| XM_026930095.2 | mRNA | downstream | 25129 | 11810109 ~ 11815273 (+) | True | sostdc1b |
| XM_026930030.2 | mRNA | downstream | 47610 | 11832590 ~ 11841066 (+) | True | meox2b |
| XM_034298654.1 | mRNA | downstream | 84235 | 11869215 ~ 11871010 (+) | True | LOC117595868 |
| XM_034298362.1 | mRNA | downstream | 162370 | 11947350 ~ 11968642 (+) | True | si:ch211-57n23.4 |
| TU405031 | other | upstream | 487910 | 11292324 ~ 11294356 (+) | True | smim12 |
| TU405030 | other | upstream | 488236 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU404551 | other | upstream | 1300296 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU403677 | other | upstream | 2552830 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU403492 | other | upstream | 2866422 | 8912973 ~ 8915844 (+) | False | sem1 |
| XR_004577055.1 | other | downstream | 25129 | 11810109 ~ 11815273 (+) | False | sostdc1b |
| TU405918 | other | downstream | 907045 | 12692025 ~ 12695512 (+) | False | fabp3 |
| XR_003403671.2 | other | downstream | 1000857 | 12785837 ~ 12792473 (+) | True | LOC113536228 |
| XR_004577016.1 | other | downstream | 1119643 | 12904623 ~ 12951963 (+) | False | si:ch211-199g17.2 |
| TU406031 | other | downstream | 1292190 | 13077170 ~ 13081229 (+) | True | G342718 |
