RNA id: XM_026917884.2


Basic Information

Item Value
RNA id XM_026917884.2
length 5065
RNA type mRNA
GC content 0.55
exon number 5
gene id si:dkey-89b17.4
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 806305 ~ 817243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCATTGAAGCCTGCAGGAAGTGTGCGCTGAACAGggctgaggagaaaaaaaaaaaaaaaaagacggcGTCGTCGCTCGAGCGCTTTCACTGAAgcgggtttaaaaaaataaatatggcGAGGGAATGAGTTTATAATTCGCGCGCGCAGATTAGCAAAGAACAGACCTGCTGATCGGTTCCCCTGCTGTCGGATGTTTCGCAATACGGTCACTGCAGCGTAAGGACAGACGTAAGGACCTCCGCTTTCAGTCTCCCCCATCTGGCGCCCCGCATCTGTCCAGACGCTCTCTGAACCGCCGGGATCCGAGTGGATTTGAAAGGCTGACTGGAGCGAAAAATCTGCCTCCCAGGTAAAATGGCTGATACCACAGAAGCAGAGAGCTGAGCATCACACATTGCCCCCCCTTTCTTCTATGTTCGAGGATCATTTTATGTGGACATTTTCCCCTTCCATTTCAATTTTCTCATCATGGCTATGCATGATATGAATCGTGCCAAGGGTTTTCCTTGCAAAGAATGCGACATGATATGCCCAAGTACACCTAGTCTTCTGGAGCATATGAAAGCCCACTATCACCAAGAAGCGATTGGCAGATTTGAATGTGAACAGTGTGGACGAATTTTCAAGCATGCCAGTAGCTTGGCGTCGCACAAAAAGTCCCACGAGCTGGGTTCTTTCCAGTGCCCAGTGTGTACCAGAACACTACCCAATGCAATAGCCCTGAAGAACCACCTCCGCATTCACACTCTGTCTCCTAGTGCACAAGCTGAAGAGGAGAATGAGGATGGTGTTGATGAAGATAGGGATTATGGCTTAGCACAAGATCTTTCTGACACAGGTTACCGGGGCCACCTGAACAGCAGCGGCAGCATGATGGCGGGCCACGACCACGACAAGCAGAAGTCTCCGGGGTCCGAAGATGCTTGGGACAGGCCGTTCAAGTGTGACCAGTGTGACAGGACCTACCGGCACCACGGCAGCTTGGTCAACCACAAGAAGTCCCATCAGGAAGGCACTTACAAGTGTACCGTCTGTTACAAGCAGTTCAGCAATCTGGCAGCGCTCGGGGCCCATGAGCGCACCCATTCCAAGTTCAAGCCTCCTGGGATGTCCATGGGAAGCCTCGTGCCGGAGGCGTCGTCCGAACATCGCCCCCCTGCCCCCCAAAACGACGACATGGCAGCCTGCTTTTGCCACCTGTGCCAGGTTTCTTTACCCAGTAAGAGTGACTTTCAGGAGCACATCCTGTTGCATAATGCTGCATCGTCGTCGTTGGGGCTGACACGTAGTTTCCCGGGGATAGTGCCACACAATCTCAGCACTGTCCGTTCCCCAGCGGTCAATCCGTACACCCCAGCTCTTGGCGACCCTCTTCCACTTCCCCCTTTACCTGACAAACGTTACGATCAGATGTTAGGTCCTCCTGTCAACAACCCCATTTATACGTGTGCATACTGTGGGTCTGGACATTCCGATGTGGAAAGTCTCAAACTGCACTACTTGACCCATGAATCTCACCCCTCAGCACATGCCCAAGTGGGACCCTCTATCCTAAATTCAGATGGCCTGGGCTCCAACTCCCAGCCATCTGTGTCCTCGCCCAGCGGGGAATCCAGATCCCAGCAGCAGTCCTCGTCCATTGATGACGCAGACCGCAGGTTCAAGTGTCAAGAGTGTGGAAAAAGCTATCGGCATGCAGGGAGTCTTGTTAATCACAAGCGCTGTCATCAAACAGGGCAGTACCAGTGCACCGTTTGCTGTAAGGAGTATCCTCACCTTGCAGCGCTTCACAGCCACCTCCGCAGTCACAAATCCCGCCCAAACTCTCAGGGTATGAACTCAGAAGGTGACTGGCTCTCTTCCGAGCCCATGACAGGCCTAGATTCCCAGCAAGGCTTTGTGCATTCTCAGGATCAGGAGAATGGCGCAACGACACCCATCTCACTTTCTGGTAATCTCGGTGACGCTGCCCATTTCGTTCCAGACAGTGGCCATAGCAGCGGCCTCGACTCACTGGAGTTCCATGACCGGTTTGATGGCTCGCTGGCTCAGGGCAACTCTGGCCATCCGCAGAACAGTCGCCAATCAGACCGGAGCATGTGTGCTGAACAGGGCAGTATGTCCAACGGCTACATGGGAAACATGGGCTTCCACAGTTCAAGTGGTACTTCTTTGCCAGCAAGCAGCTCCAGCCTCAAAGAAGGCAGCCGCCAGCGACGTGGACAAGAGCAGTATGGAGGAAGTCAGGGAGGCCAGTCTAAGAGAATCGAAGACAAAGAAGATGATGGTGAAGTCTACCAGTGCACAGTCTGTGGGAACCATTACGCAAGTCTTCGGGCCCTTCGTAGCCACTTACGCAGCCATGGCCTGAACCAAGGTGCCGGACCTTCCTCCTCCCTTTCACCTGTAGGTGAGCAAGAGTGGAGGAGGCGGCAAGAGGGTAGTCAAGCCAGTCTGCTGGTTTGTAGTATATGTGGCCAGACTTTCAGTAAAAAACACGACCTTCTTAATCACCAGTTGGTCCACGGACCTCCTCGACCGGGTGGCTCTGGACAGGGCTTGGGGGGCGGCAGCTCTAGTGCTAATGGCAAAATGGATGGAAGGAACCACATTTGCGTTGACTGTGGCATGTTCTTTGCAGATCGCCATCACCTGATCACTCACCTGTGCCCAGGCAAGGGGAGAGGCGGAGTGCTGAGCAAAGACTTGAACGGAGCTAAAGGGATGAGTGGTGGTGCTGGGACCAGCAGCAGCGCTGTGGGCCACCGGCAAATGTCCGGCTCGGACGATCGGCCACATAGGTGCGACCAGTGCGGGAGGGGTTACAGGCATCCATGCTCACTTCTGAACCACAAGAAATCGCACAAGACTGGGGTCTTCCGCTGCCTTGTCTGCCAAAAACGCTACTACAACCTGCTGGCCCTCAAGAACCACCAGAGGACTCATTTTGACTTAAAGAGGCACAAGTGCGAGGAGTGTGGCAAAGCCTTCAAGATCCAAAAGCAATTGATCAACCATCTTCGTCTGCACGAAGAGCACCGAGCCAAAACAGGAGGTCGAGACCAGCGCGTCCAAAGCATGAACCAGCATAACGGATCACGTTACGAGGGCGGACCCTCTCAGATGCAGCCGATGAGAATGGGGGACCCTAAAATGCAGAACCCTTCCCAGATGATGCCCAATTATGGCCAGCCGCAAGGTTTTAAGAAGCCGTACGCCGGTGCGAGGGCCCAGCAGGTGGACGATGGAAGTGGGCGGCGCCCTTTTGCCTGCGATCAATGCGGCCGCACCTACCGTCACGCTGGCAGTCTGGCCAATCACAAGAACCTGCACAAGATCGGCGAGTACCATTGCAACGTTTGCAACTCCACCTACCCCAACCGTCTGGCTATGAAGAACCACTTGCGTATGCATTTTGCTCTCAAGAAGTTCTCTTGCCAAGACTGCGGACGCGGGTTTAGGAACCAGAGGCAGCTTGAAACTCACACTACCAACCAACTTTGCAAAGACCTTCCAGGTCCGAGTGTGCAGCCGACAATGGCACCTCCTCCTCCAAGCTACGAGTGCAACGGATGCTCTGAATGTTTTCGCTCCTCCTCCGACCTCGCTTCGCATAACTGCAGCGCCCAGCTTCCTTCCTCCTCAGCCTCCCTCAACAGCTCTAGTTTGACCATGGAACCCGGGGACCTGGGATCTCCAGAACGCGAGGAGCGACCTTTCTCCTGCGACCTCTGTGGCTGCTCATACAAGCATGCCAGCAGCCTTCTGAACCACAAGAACACGCACAAGACGGGGAACTTCAGCTGCTCCTACTGTGACAAGCCCTACACCAACTACATGGCGCTGCGCAACCACATGCGCATCCACACGCAGAAGAAGAGGCACATCTGCTCCACCTGCGGGAAAGCCTTCCGACTGGCCCGATTCCTGCGCAACCATCAGAGGGTCCACGAGGAGGGACACGCCCGATTCGGATGCCCCACCTGCGGGAAGAGCTTCCAGGGGCGCTCTGGGCTGGCCAGGCACCGCTGCGGGGACAACCAGGTAGGCAACGAGTACAGGAGGAAGGACACTTCCAGCACCTCGAGAGAAGGGGCAGAAGAGTGCCGGTTCACATGTGAGCAGTGCGGCCGTTCATACCGTCACGCCAGCTCTCTGCTgaaccacaaaaacacacacaccgtcggCATCTATCACTGCGCCGTGTGCCTCAAGACCTACCCCAACCTGCTCGCTCTGAAAAATCACCGTCGGATCCACTCGGAGTTGCGGCGGCACCGCTGCGCGGAATGTGGAAAGGCATTCCGCGTCTTCTCTCAGCTTCAGAACCACCGCCAGCTCCACCAGAAGGAGCGCGAATTCACGTGCACGCAGTGCCAGCGCACATTCCCGAGTCAGACCAGCTTCCGATTGCACCTACAGATGCAACACGGACGAGCCCAGAAATCCTCACACTACTCCCACCAGCAGAATCCGCAAGGTTCCTCTGGCGGCAGTTCCGACCTCGGATGGAGTTCTGGGCTTGACCTGACCCTGATGCAGGCCTGTCACCAGAATCCGCCACAGCGCAGCCGCAACGACGCGGGCCACAAGTCGCACGTTTGCGATCAGTGCGGGCGCGGGTACCGCCACGCCAGCTCCCTGCTCAACCACAAAAACAGCCACAAGTCCGGCACCTACTACTGCAGCCCCTGTCAGAAAGAATTCTCCAACCTGATGGCGTACAAAAACCACCGCCGCATACACACAGAGCCGAAGCGGTATCAGTGTTCCGACTGCGGGAAAGCCTTccgcgtttcgacgcagctcgtgTGCCACCGTCGCATCCACACCAAGGAAAAACCTTTCTCATGCCAGCAGTGCGACAAACGATTCTCCAGCAAGTCAAACCTGCGACATCACCAAAAAGTCCACTGGTCCCACAACAGCAGCGCCCCCATGGGCACGTCGAATTTCCTGGCGATGCCAACTGGaccttttatataatataaatcacACCCCGGGGAGCAGGAACTTCTTAGTGGAGAATAGTGACGTGGTTTCTGGAGgtgccaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403018.2 lncRNA upstream 27283 775875 ~ 779026 (+) True LOC113528997
XR_004577067.1 lncRNA upstream 27283 775878 ~ 779026 (+) False LOC113528997
TU398085 lncRNA upstream 33481 768195 ~ 772828 (+) True G336167
TU398045 lncRNA upstream 162171 643931 ~ 644138 (+) True G336143
TU398043 lncRNA upstream 174008 631774 ~ 632301 (+) True G336141
TU398126 lncRNA downstream 72575 889818 ~ 893496 (+) True G336202
TU398124 lncRNA downstream 72953 890196 ~ 906892 (+) False G336202
TU398135 lncRNA downstream 87996 905239 ~ 906488 (+) True G336209
TU398176 lncRNA downstream 188989 1006232 ~ 1008093 (+) True G336241
TU398178 lncRNA downstream 198729 1015972 ~ 1016631 (+) True G336243
XM_026917889.2 mRNA upstream 94800 706407 ~ 711509 (+) True LOC113528988
XM_026917896.2 mRNA upstream 112813 690756 ~ 693496 (+) True LOC113528992
XM_034298507.1 mRNA upstream 120821 682280 ~ 685488 (+) True LOC113529047
XM_026917895.2 mRNA upstream 127779 675097 ~ 678530 (+) True LOC113528991
XM_026917893.2 mRNA upstream 142025 659869 ~ 664284 (+) True LOC113528990
XM_034298638.1 mRNA downstream 76523 893766 ~ 906770 (+) True utp18
XM_034298503.1 mRNA downstream 93329 910572 ~ 950118 (+) True LOC113529000
XM_034298639.1 mRNA downstream 132232 949475 ~ 951383 (+) True LOC117595860
XM_034298749.1 mRNA downstream 207235 1024478 ~ 1033504 (+) True ube2m
XM_034298746.1 mRNA downstream 221722 1038965 ~ 1061366 (+) False kpnb1
TU398091 other upstream 11614 794117 ~ 794695 (+) True G336172
TU398067 other upstream 56635 739369 ~ 749674 (+) True G336161
TU397921 other upstream 519094 286849 ~ 287215 (+) True G336034
TU398147 other downstream 156426 973669 ~ 976321 (+) True G336213
TU398245 other downstream 315745 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 452566 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 508573 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 840074 1657317 ~ 1659459 (+) True G336433

Expression Profile