RNA id: XM_026917893.2


Basic Information

Item Value
RNA id XM_026917893.2
length 1505
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC113528990
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 659868 ~ 664284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCATCTCCTCACTCGCTCATCACTTGATTCCTCTCGTGCTTGTTGCTGAGTTAGACTCCACTGCACCGTCACCATGGCATCCATTGTCTCCTCTCACACCAGCTTCTCCTCAGGAGGATCCAGTGGTTCCCTGCGTTCCGTAGGTGGTGGCCGCGTGAGTAGTGGGAGAGCCCTGAGCGTTTACGGAGGCGCCGGTAGGTATGGTGTACGTGTCTCAGGTGGCCCCGCGCTCCTCGGCTCTGCAGTTGGAGGTGGCTTCGCGGCAGGTGGTGGCTTTGGAGCAGGCAGCGGTTTTGGTGCAGGCTTTGGAGGAGCCGGGGGCGGTTTCAACCTCAGTGATGCCGTTGATGTCTCAGCCAGTGAGAAGCTGACGATGCAGAACCTGAATGAGCGTCTGGCCTCCTACCTGGATAAGGTGCGCTCACTGGAGAAGGCCAACGCCGATCTGGAGCTCAAGATCCGTCAGTTCCTTGAGAGCAAGACCTCACCCAAGGCCCGAGACTACTCTGCTTACTTTGCCACCATCAGTGACCTGCAGGACAAGATCCAGAATGCCACACGCATCAATGGAGGCATTTACCTCAGCATTGACAACGCCAAGCTCGCTGCTGATGACTTCAGAGTCAAGTATGAGAACGAGCTGGCCATGAGGCAGTCGGTGGAGGCTGACATCGCCGGGCTGAGGAGAGTCCTGGACGAGCTGACGTTGGCCAGATCAGATCTGGAGATGCAGATTGAGGGTCTGAAGGAGGAGCTGGTCTTCCTCAAGAAGAACCACGAAGAGGACCTCATCGCTGCACGGTCTCAGATGAGCGGTCAAGTCCACGTGGAAGTCGATGCCAAACCACAGGAAGACCTCAACAAAGTCCTGGCTGAAATCCGCGAGCACTATGAAGCCGTCGCCGCTAAAAACCGCAGAGATCTCGAAGCTTGGTTCCAGaccaagAGCGAGGCGCTGAACAAAGAAGTCGCCGTCAGCACGGAAACGCTCCAGACCAACAGATCGGAACTCACAGAGGTGAAGCGCACGCTGCAGGGGCTGGAGATCGAGCTGCAGTCACAACTCAGCATGAAAGCGTCGCTGGAACACACGCTAGCAGACACACAGGCACGCTACGCATCCATGCTAGCAGGCTACCAGCAGCAGGTGATGAATCTGGAGGAGCAGCTGGTGCAGCTTCGCGCTGATCTGGAGCGTCAGGCTCAGGAGTATCAGATGCTGCTGGACATCAAGACCAGACTGGAGCTGGAGATCGCTGAGTACAGGAGACTGCTGGATGGAGAAAGTGTCGGAAGcagctccagctccagcatcGCCACCAAGCGCCATGTGGTGAcggtggtggaggaggtggtggaCGGCAAAGTCGTCAGCTCCACTTCCAAATCCGTCACAAATAAACTGTAAGGAAACATCGCGAATGAGAAGAACACAAACATCCTCCAAGAAACATGAATTATGACAATGCTAAAACatcaataaagtgttcagtcttaaacatg

Function

GO: NA

KEGG:

id description
K07604 KRT1; type I keratin, acidic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398045 lncRNA upstream 15731 643931 ~ 644138 (+) True G336143
TU398043 lncRNA upstream 27568 631774 ~ 632301 (+) True G336141
TU398012 lncRNA upstream 32920 622732 ~ 626949 (+) False G336115
TU398085 lncRNA downstream 103911 768195 ~ 772828 (+) True G336167
XR_003403018.2 lncRNA downstream 111591 775875 ~ 779026 (+) True LOC113528997
XR_004577067.1 lncRNA downstream 111594 775878 ~ 779026 (+) False LOC113528997
TU398126 lncRNA downstream 225534 889818 ~ 893496 (+) True G336202
TU398124 lncRNA downstream 225912 890196 ~ 906892 (+) False G336202
XM_034298757.1 mRNA upstream 97551 561278 ~ 562318 (+) True LOC117595880
XM_034298760.1 mRNA upstream 119148 539688 ~ 540721 (+) True LOC117595881
XM_034298637.1 mRNA upstream 163551 485216 ~ 496318 (+) True LOC117595859
XM_034298752.1 mRNA upstream 220253 428318 ~ 439616 (+) True LOC117595878
XM_034298634.1 mRNA upstream 265679 393549 ~ 394190 (+) True LOC117595858
XM_026917895.2 mRNA downstream 10813 675097 ~ 678530 (+) True LOC113528991
XM_034298507.1 mRNA downstream 17996 682280 ~ 685488 (+) True LOC113529047
XM_026917896.2 mRNA downstream 26472 690756 ~ 693496 (+) True LOC113528992
XM_026917889.2 mRNA downstream 42123 706407 ~ 711509 (+) True LOC113528988
XM_034298470.1 mRNA downstream 142021 806305 ~ 816470 (+) False si:dkey-89b17.4
TU397921 other upstream 372654 286849 ~ 287215 (+) True G336034
TU398067 other downstream 75085 739369 ~ 749674 (+) True G336161
TU398091 other downstream 129833 794117 ~ 794695 (+) True G336172
TU398147 other downstream 309385 973669 ~ 976321 (+) True G336213
TU398245 other downstream 468704 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 605525 1269809 ~ 1335530 (+) False G336334

Expression Profile