RNA id: XM_026929397.2


Basic Information

Item Value
RNA id XM_026929397.2
length 2899
RNA type mRNA
GC content 0.41
exon number 10
gene id cdca7b
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6188169 ~ 6197615 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCCCAGAGTGTGTGctcttattgttttttaaactcTTCATTGTGTGGTGGATTTTGAAGATCAGCTGGAGCTCAGCAcaaatttgttctttttgttaACAATTTAAGTGTTTTGGTGAACTATGTGCACAAGAATGAAGAAAGCCTTGGTGGACATATTTGAAGGCCCGAGTGACGAGGAGGAGTTTCCTGGTTTCGGAGGTGCTTCTTCGGGGCAGTTCTCTGAGGAGAGTCGAGACAGCCTCCACTCCCAGACCTCATGGAAGCCGGTTCTTCGCTTTAAATCTAAATTCATAACGGAAGAGCTGGCTCAGGTCTTCATGGACACGGACAGTGAAGGAGAGTTTGAAGGTTTCAGTAAAGAAGAGAGCTCTCTACGTAACAGCTGGATGAGCCCCATTGATTACGAGGCAGAGGAAGACAGTGATGACATTGGGTTTTATTCAGATGACGATGGTTCGGCCCCGCAAAAAAGGCGGAGCTCAGGATTGTGTGTCGCGTTCAGGTTTCCTGCCAGAAGACGCTCCACCCGAGAAAGCACCGTGCCAAAGAAATCCGGAGTTTCCCTGAACAGAAATCAGCCTGCGGAGAGAAGcagaaagaggagaggaggcaGTGCAGATCCACCTGTGGctcagaaaagcagaaaagttgAGAAAAGATCCAAAGTGACGAATAATGACtctgaggaagaggaaaaagaggaggatgaggaggacgaggaggaggaggaggaggaagtcaAACTAACTGAGGCAGATGTACAAATACTGAGTCAAAGGGCTAAGAATATTCAGGAGAATAAAGCAATGcTTGCAAAGCTATTTGCAGACCTGACCTCTTTACCTGAACTCTCCCGAAAGACCATGCCCATGaagaagaaaaagcagcagAGTCCAAGAAAGCGTGTGTCTGAAGTACAGAGTGAGAGGCGGAACCCAAGCCGCAAAGCCAGACCCCCTGAGCATTTTGGGCTCGAGCAAGAACCGGTTGTTGCTGCGAAACCAAGAAAGAGTGTAGAATTCAACCTGAAGAAACTGatggagATTGATGAGGGGCTGCGTGTGAACAGAGACACACCAAGAAGAAAATCCAGGAAGCGCAGTTCTGTACGAATGCCAGAGGACATCACAGAGGAGGAGCTGGACAACGTGGCTGACCGCGCTAAAGACAAAATTCTTGATAAAGAAAATGGCAGCACATGTCACCAGTGCAGACAGAAGACATTGGACACTAAGACTGAGTGCAGGAACCCGTACTGTCAGGGGGTCaaagggcagttctgtgggcccTGCTTGCGGAACCGCTACGGAGAGGACGTCCGTACAGCTCTGTTAGATCCGacatgGGAATGTCCTCTGTGTCGGGGTGTCTGTAACTGTAGCCTGTGCCGTAAACGGGATGGACGCTGTGCCACTGGTGCTCTTACTCACTTAGCCAAATATTATGGCTACAACAATGTCAAGGAATATCTAGAGAGtcTGCAGAAGGATCTTGACTGAAACcaggccagtgtgtgtgcaggaaccTACTGTAAGATGTCAAAGGGTTAAAGGAACACTGCAGCGTTTTTCAGCCTTATCTCTATCCTCCACATCTGTAGAGTATGTGAGGCTACCACAGACGGGAATTTTGACTAGGTTTGCTACACTGAGGAGAGAAACCGAAAACCTGTTATTACTGTTCTTGTATAGTTTTATCCAACTTTGACACAGGAGCAATACAGTAGACATGTACAGTCAAATCCATACGACTATATTGGTAACAAacctacaatttttttttttcccccttctgaAGTATCCATCATATCTGAAATGACATTATGCagattaatcattttatttacgaATACCTTTGAATGAAAAATTCACAAGTCCTACAAAAATGCATGTTATGTGTAAGCAGTAATGTCATCTGTAATGGGAACTGCCCTTAGATGTCCTTACAGGTTTACTGTGCTTTTAGAGGAAAagcttctttgtgtttttttttttttttttctttttttcattttttaaaaagacatgcATCACACAAgtgctctttattattatttttatttgcatagatatttttggattttatattcaacattttacatttgcagAAAATGCACATCATTACCAGGCTAGTCAGAgttgtgtgtataatatactTATTCActttatcaaaaaaataaataaaaataataataaataataaaaaatcccTCGGCCAATGGGTAGaatgttcctgagaaaccacTTTGTGCAAAATctttacagatttatatttatctaGGTTTTAAATCTCCTATAAATGAAATCTGTTAGATctgaaaaattttaaaacatttttctgccctggacataaaaaaaaaatgaattagcATTTTGAAGCATTTTAGATGGGACACATTTCAAAACAACTGATTTAGACACTGAATTCTGCTTACAGTCTTCTTCTAAGTAAGGGATGCACttatataaaactatttttgttatattggCTCTTGATTGCAGCACTTTGCATTTGAAactaaacactgacactggattTAAAGTGCAGTCTTTCAGTAAATGTTCGTTTTTAATCAGATCCGGGACAGATGATAGTTTATACTGATTAAAGTTTGATTTTAGAAATTGTCCAGTTTTATGTTTGTATCGCAAAAAGAGAACTTTCGGTTTTATAGTTATGCTCAAAAGAAGTTCAACAGGAACTCTATTGTATTACCAAGATTTAatacttgtgtatatatacatccTGCCACATCCTGTTTTGtcatctttcttctttttttccccctttttacCGTCCCAGTGTGTAAGGACAGCACTGTGTATGTTCTTCTGCTTGGCATTCTATAAAATCTGTACAATCATTGttgttttctaaataaataccTGATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401768 lncRNA upstream 12572 6174321 ~ 6175597 (+) True G339159
TU401728 lncRNA upstream 59885 6116749 ~ 6128284 (+) True G339126
TU401647 lncRNA upstream 199677 5987811 ~ 5988492 (+) True G339055
XR_003403669.2 lncRNA upstream 206437 5975872 ~ 5981732 (+) True LOC113536203
TU401536 lncRNA upstream 332739 5854658 ~ 5855430 (+) True G338961
TU401777 lncRNA downstream 2878 6200493 ~ 6201623 (+) True G339167
XR_004577070.1 lncRNA downstream 115870 6313485 ~ 6319774 (+) True LOC117595885
TU401912 lncRNA downstream 276867 6474482 ~ 6526317 (+) True G339275
TU401913 lncRNA downstream 276867 6474482 ~ 6526317 (+) False G339275
XR_004577045.1 lncRNA downstream 296022 6493637 ~ 6494246 (+) True LOC117595843
XM_026930200.2 mRNA upstream 71462 6112101 ~ 6116707 (+) True LOC113536325
XM_026930094.2 mRNA upstream 79126 6100546 ~ 6109043 (+) True LOC113536255
XM_026929973.2 mRNA upstream 243945 5927706 ~ 5944224 (+) True slc39a4
XM_034298742.1 mRNA upstream 461774 5704672 ~ 5726395 (+) True zgc:63863
XM_034298744.1 mRNA upstream 466607 5704671 ~ 5721562 (+) False zgc:63863
XM_026929989.2 mRNA downstream 75332 6272947 ~ 6275012 (+) True sp8a
XM_026929529.2 mRNA downstream 136374 6333989 ~ 6343909 (+) True LOC113535938
XM_026929528.2 mRNA downstream 136374 6333989 ~ 6343909 (+) False LOC113535938
XM_026929527.2 mRNA downstream 136374 6333989 ~ 6343909 (+) False LOC113535938
XM_026929374.2 mRNA downstream 147856 6345471 ~ 6350729 (+) True polr1f
TU400576 other upstream 1833140 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3795691 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3795697 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3795794 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3818093 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 141892 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 407042 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 513400 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2085345 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2715313 8912928 ~ 8915844 (+) True sem1

Expression Profile