Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026929412.2 |
| length | 522 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 4 |
| gene id | rplp1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 6664093 ~ 6666353 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006414 | translational elongation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02942 | RP-LP1, RPLP1; large subunit ribosomal protein LP1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU401951 | lncRNA | upstream | 12267 | 6648179 ~ 6651826 (+) | True | G339300 |
| TU401938 | lncRNA | upstream | 18138 | 6578803 ~ 6645955 (+) | True | G339290 |
| TU401922 | lncRNA | upstream | 136999 | 6526395 ~ 6527094 (+) | True | G339279 |
| XR_004577047.1 | lncRNA | upstream | 166350 | 6494601 ~ 6497743 (+) | True | LOC117595844 |
| XR_004577046.1 | lncRNA | upstream | 169847 | 6493730 ~ 6494246 (+) | False | LOC117595843 |
| TU402314 | lncRNA | downstream | 284219 | 6950572 ~ 6951822 (+) | True | G339616 |
| TU402316 | lncRNA | downstream | 286709 | 6953062 ~ 6959284 (+) | True | G339618 |
| TU402366 | lncRNA | downstream | 566531 | 7232884 ~ 7233107 (+) | True | G339659 |
| TU402368 | lncRNA | downstream | 581467 | 7247820 ~ 7250415 (+) | True | G339661 |
| TU402412 | lncRNA | downstream | 728721 | 7395074 ~ 7399070 (+) | True | G339700 |
| XM_026930046.2 | mRNA | upstream | 1211 | 6653221 ~ 6662882 (+) | False | clptm1l |
| XM_026930047.2 | mRNA | upstream | 1211 | 6653221 ~ 6662882 (+) | False | clptm1l |
| XM_026930045.2 | mRNA | upstream | 1211 | 6653222 ~ 6662882 (+) | True | clptm1l |
| XM_026929692.2 | mRNA | upstream | 29900 | 6621216 ~ 6634193 (+) | True | znrf2a |
| XM_026929411.2 | mRNA | upstream | 48070 | 6604605 ~ 6616023 (+) | True | mturn |
| XM_034298327.1 | mRNA | downstream | 106966 | 6773319 ~ 6775535 (+) | True | LOC113536346 |
| XM_026930099.2 | mRNA | downstream | 328960 | 6995313 ~ 7008911 (+) | True | cndp2 |
| XM_034298549.1 | mRNA | downstream | 569747 | 7236100 ~ 7278140 (+) | True | tshz1 |
| XM_026930080.2 | mRNA | downstream | 808354 | 7474707 ~ 7477662 (+) | True | galr1a |
| XM_026929450.2 | mRNA | downstream | 856577 | 7522930 ~ 7531501 (+) | True | sall3b |
| TU401948 | other | upstream | 48221 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401842 | other | upstream | 320222 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU400576 | other | upstream | 2309064 | 4352522 ~ 4355029 (+) | True | G338163 |
| XR_004577077.1 | other | upstream | 4271621 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| TU401977 | other | downstream | 44662 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 1616607 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU403493 | other | downstream | 2246575 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | downstream | 2246620 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403677 | other | downstream | 2558287 | 9224640 ~ 9229436 (+) | False | bet1 |
