RNA id: XM_034298365.1


Basic Information

Item Value
RNA id XM_034298365.1
length 2849
RNA type mRNA
GC content 0.49
exon number 19
gene id gabbr2
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9822703 ~ 10006532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAAGCTGATCTAAACTTATGAACTATGAATTTGAACCATCTTGGAATGGCCCAATTAGCCAATCAGCTGCTTCTCTTATGAACCATTCATTGTCCACTAtcttggaaaaaaaactgacttgTACATCATTTGGTGTGAGATATGTTTGGATGGCATGGAAGCATAGGACAGGACCTGAAACTATGTGACAATGCAAAGGGATTAAGGGCCTTCTTCGACGCAATCTGCTATGGTCCCAAACATTTAATGATCTTTGGAGGAGTGTGTCCTTCAGTGACATCTATTATTGCTGAGTCATTAGAGGGGTGGAACCTGGTGCAGCTATCTTTTGCCGCAACGACGCCAGTCCTGGCAGATAAGAAGAAGTACCCTAACTTTTTCAGGACAGTTCCTTCAGACAACGCGGTCAATCCAGCTGTTGTGAAGTTCCTCAACTACTACAACTGGAGCAGAGTGGGGACCCTGACTCAGGACGTCCAGAGGTTCTCGGAGgTGCGCAATGATTTGACCAATGAGCTTGAGAAGGCAGATATCCAGATAGCAGACACTGAGAGTTTTTCTAATGATCCCTGTGTTAATGTGAAGAAACTGAAGGACAATGATGTGAGGATCATCATTGGTCAGTTTGATGAGAACTTGGCCTCTAAAGTCTTCTGTTGTGCATATAACCTGAACATGTATGGCAGTAAGTATCAGTGGATCATTCCAGGATGGTACCAAGGCAATTGGTGGGAACAGGCCAACTCTACCAACTGCACCACCAAGAAACTGCTTACTGCTATGGAGGGGTACATAAGTGTGGACTTCGAGCCTCTCAGTGCCAAACGGATTAAAGGAATCTCTGGAAGGACACCCCAAGAGTATGAGCGGGAGTACAGCAGAGAGCGGGAGCAAAAAGGAGTGGAGGCCAGCAAATTTCACGGTTTTGCCTACGACGGTATCTGGGTGATTGCTAAGACACTAAGCCGTGTTATGGAGCTGCTCCGTCAGAAGCAGAGGCATGACATTTACCATAACATGACCATGGATGACCAGGAGGTGGGAAAGTTAGTGCTGGATGTGATGAACGAAACCAACTTCTTCGGAGTGACGgGTCAGGTGATGTTCAGGAATGGAGAGCGCATGGGAACCATCAAATTCACACAGTTTCAAGAGGGCCAGGAAGTAAAGGTTGGGGAGTACAATGCCATCGCTGACATCCTGGACCTTATCAACAACACCATCAGGTTCCAAGGTGTGGAGCCTCCCAAAGACCGGACGTTTGTGCGTCTAGAGAGACGCCATATCAACGTGCCGCTTTACAGCATCCTGTCCACCATCACTATCCTGGGCATGCTCATGGCAGGCGCCTTCCTCTTCTTCAACATCAAAAACCGAAACCACAGGCTGATCAAAATGTCCAGTCCTTACATGAACAACCTGATCATCCTCGGAGGCATGCTGTCCTACGCTTCCATCTTCCTCTTTGGCCTGGATGGCTCCTTTGTCTCAGACCAAGCGTTCGAGACCTTGTGCACTGTTCGCACGTGGATCCTCATCGTGGGTTACACAACAGCGTTTGGAGCCATGTTTGCTAAGACCTGGAGAGTACATGCCATTTTCaagaatgtaaaaatgaagaagaagATTATCAAGGACCAGAAGCTGCTGATCATTGTGGGAGGAATGCTGCTAATTGATCTGTGCATTCTCATATGCTGGCAGATTGTGGATCCCCTGAAGAGGACAGTGGAAATGTACAGCTTGGAGGCCGACCCTCAGGGGCGAGACATGGCTATCCGGCCCTTCCTGGAGCACTGTGAGAACACACATATGACTATTTGGCTTGGGATCGTCTATGCCTACAAAGGTCTCCTTATGTTGTTTGGTTGTTTCCTGGCCTGGGAGACGAGGAATGTCAGCATCCCTGCTCTGAATGACAGCAAGTACATCGGGATGAGTGTGTACAATGTGGGAATCATGTGCATCATCGGTGCAGCTGTGTCCTTCCTGACACGGGACCAGCCGAATGTGCAGTTCTGCATCGTAGCCCTGGTCATTATTTTCTGCAGCACTATCACGCTCTGCTTGGTGTTTGTGCCAAAGCTTATCACAATGAGGACAAACCCAGATGCAGCCACCCAGAACCGTCGGCTGAAGTTCACCCAGAACCAGAAAAAAGAAGACTCAAAGACATCCACATCAGTGACCAGTGTTAACCAGACCAACACGTCCCGCCTGGACGGCTTGCAAGCAGACAACCACCGCCTCAGGATGAGGATCACGGAGTTGGATAAGGAGTTAGAGGAGGTGACCATGCAGCTTCAGGACACACCAGAGAAGACTCCCTATATCAAACAGAACCACTACCAGGACGTCAACAACATTCTGAGCATACGCAACTTCACAGACAGCAAAGaTGGTGAGAAAACTGTTTTGAAAAATCATTTGGAGCAGAAACCACAAGCACTGAGGGGATCCATGGATCCTTCTAGGATAAGCAGAGGCCCACTAGAGGACATAAACTCACCAGAACACATACAGCGCAGGCTGTCTTTGCAGCTGCCCATCCTGCACCACGCCTACTTACCCTCCATAGGAGGAGTGGACGCCAGCTGCAGTCCCAACAGCAGCCCAGCCTCAAGTCCCCGCCACAGACACATGCCCCCCTCCTACAGGGTCATGGTCTCTGGCCTGTGAGTCCTACCACAGCTCTGCGCTCTGAGGAACAGATCTCCGTTTGAAATCAAACAGACTGAGCCACATCAGCAATGAACggaagtgtgtgagtgacctAGGGGGGGTCCTCCTCGTACATACATCCACGACCCTCCTCCCATCTACGTCTACGTCAGAACAAAACTGATC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404103 lncRNA upstream 134295 9728928 ~ 9730969 (+) True G341038
TU404020 lncRNA upstream 196036 9627788 ~ 9669228 (+) True G340967
TU403973 lncRNA upstream 299738 9557697 ~ 9565526 (+) False LOC113536134
XR_003403660.2 lncRNA upstream 304891 9557738 ~ 9560373 (+) True LOC113536134
TU403683 lncRNA upstream 618216 9246479 ~ 9247048 (+) True G340687
TU404499 lncRNA downstream 187244 10193776 ~ 10197002 (+) True zgc:91910
TU404568 lncRNA downstream 391678 10398210 ~ 10398409 (+) True G341468
TU404570 lncRNA downstream 392421 10398953 ~ 10399867 (+) True G341469
TU404547 lncRNA downstream 430872 10437404 ~ 10458143 (+) True G341449
XR_004577048.1 lncRNA downstream 439796 10446328 ~ 10447955 (+) True LOC117595845
XM_026930073.2 mRNA upstream 59160 9804036 ~ 9806104 (+) True LOC113536234
XM_026930023.2 mRNA upstream 64180 9782215 ~ 9801084 (+) True galnt12
XM_026929682.2 mRNA upstream 85553 9761655 ~ 9779711 (+) True poc1bl
XM_026930186.2 mRNA upstream 247239 9604471 ~ 9618025 (+) True pex1
XM_026930031.2 mRNA downstream 35892 10042424 ~ 10047887 (+) True abitram
XM_026930122.2 mRNA downstream 141117 10147649 ~ 10154191 (+) True ccn4a
XM_026930175.2 mRNA downstream 181161 10187693 ~ 10190316 (+) True wdyhv1
XM_026930176.2 mRNA downstream 181161 10187693 ~ 10190316 (+) False wdyhv1
XM_026929413.2 mRNA downstream 187215 10193747 ~ 10196700 (+) False zgc:91910
TU403677 other upstream 635828 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 949420 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 949420 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 1580060 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 3148118 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 467951 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 1285792 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 1285792 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 1803577 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 2685493 12692025 ~ 12695512 (+) False fabp3

Expression Profile