RNA id: XM_026929450.2


Basic Information

Item Value
RNA id XM_026929450.2
length 4750
RNA type mRNA
GC content 0.45
exon number 4
gene id sall3b
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7522930 ~ 7531501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAAAGTCCGCGCTTCATTTGCATATCCCGCGCGGCCCGTCTGGAAAGCAGCCAATCCCAGCGCGCGCGCGCAGGCCGGCTTTACTCCTGATGCGCGAGCCTGTATCATCATCAGACCTCCGCCATGCGCAAACCGCGCAGCGCTGACACCATCTAACATCCCACAGCCCCGAGCACCCGCCGAGCCGCCGCCGTGCGTCTGTCCCCACGCGCCGCGTCCGCCACCGATGCGCGGGCGCACGAACCGAACAGGATGTCCCGGCGCAAGCAGGCCAAGCCTCAGCACGTTACCGCGGGAGAGGAGAAGGAGCAGCGCGGGAGAGGCGCGGAGAGCGTGCTCTTGAGTAAAGGTGCCAGTGAAGAGAGTGGCAGTGAGAGCCGCAGCGGGAATGAGGAGACTCTTGTCTGTAAGACATGTTGTGCTGAATTTTTCAACTGGTCAGAGTTGCTGGAGCACCAGAATAAGTGCACTGAGGAGCCTTCTGTGCTCATTGTACAGGAGGATGAAAGATTTCCTTCCCCTCAGGGATCTCCTACGGAATCCTTCTTAAGTGCTCATAGTGACCCAGCTGAAACTGAGAACATGGAACCTGAGTCTGAATCGTCtgagaaaggagaagaaaatgtCAGTCTTCCTGAAGAAAATTATGCAGCCGGAGCAGATGACCCTATGGATACTACCGCACCTGTGGATAAAATATCAAACCCCAGCCCTCTTCCACCAGACTCCAGTGAAAGCACCATTCCTCTACCTTTATCATGTCTAAGCACAAACTATGGCATTCCCAGTACGAATGTAACCTTGGAGATCCTCCATAGTACCAGGGTGGCAGTTGCACAGTTTTCCCAAAGTATCCAAGGTGATGGATCTGGAGGTAAGGCGAGCTCCGTGGCAATACCTATGATTTTGGAACAGCTAATGGctttacagcagcagcaggtccACCAGCTGCAACTCATTGAACAGATCCGCAATCAGGTCGCCGTGATGAACAGGCAACCAACACAAGCTGCCCTAAACCCAGCCTCAAAGGcatttccctctgtctcttgcACTTACCATTTCCAGGGCATGGCCCCTCCTCCTGTACTTCCATTATCTGGAGTCATTCCTTCCACAGTGAATGGGCAGGCTTCTGTGTCCCAGGCAGCCAGGCAGGAAGGCCCGTCATTTCGGGTATCACAGCAACATAATGAACAATCCAATCCCAGAGAAAATGATAGTACCCCCATTTCCCTAGCAAACCCAAATGCTCCTCTATCTACATATACTGGGGTGTCTGCTTTATTGCCATCCTGCAATGGTGCTCTCTCTAATGCTAGTAATACCCAACCTATGAGCTCTCCTCATCCCCATTCAATAAGCCAGAGCAATGTTATCAACACTTCTGCCAACTTACCACTGCTACCTCAAAGCCCTCCTAGCGGAGTCATCTTCCCAAACCCACTTGCCAGCATTGCAGCCACTACCAATGCACTAGAACCACTTGCTTCTATGATAAAGCATCGCAAAGGTAAAATGCCTAATGCCTCCATATTTGAAACCAAGCCCAGCTCTGAGGACCCCTTTTTCAAACACAAATGCAGGTTCTGTGCCAAGGTATTTGGCAGTGACAGTGCCTTGCAGATCCACCTGCGATCTCACACAGGTGAGAGGCCCTTCAAATGTAACATATGTGGCAACCGTTTCTCCACTAAGGGAAACCTGAAAGTTCACTTCCAAAGGCACAAAGACAAATACCCACATGTACAGATGAATCCATACCCAGTGCCAGAATATCTTGATAATATTCCAACAAGCTCTGGTATTCCCTATGGGATGTCTTTTCCTCCAGAGAAAGCAGGGTCAACATGGTTAGAGAGCAAACCTATTCTACAGGCATTACCTCCTAGATTGGGTCTGCAGTTACCCCCAACAGTAACAAGTGTGGAAAACATCAGTGATTCCTTTAGTAATGCACCCACAGGAAGATCTCCACAAAGGTCCTCACTAGCTAGAAATGAAAGTACACCATTGTCTCCAAATGTCACTAGTACTGAAAAAGATATTCCTATACAGTCTGACAGCCAATTACATACGCCTAAGGTGGCTGGGTGCCTCCAGTTAAGCAAGGAAGCAGGGACCACAACAGTTTCAAAAACTGATGAAATTTACCTTCCCACAAACTGTGTGACTGATCCAGCTGAAAATATCATCTCTGCAAGTCACAACATTCTTTCAAAATTTCCATCAGCAGAAATACCAGTTAGAGCAAATACACCAGAGTCCACTGATGTGATTACCCCAGTGATGAAATCTTCTACTCCTTCTCAAATCTCAGAGCACATTAAAGCCAGATTTCCACTCAGTGGAGTCCAAGAATCTATGCAGACATCTGAAACATCAAAGCTCCAGCAACTTGTGGAGAACATTGACAAAAAGATGATGGACCCCAATCAGTGCGTGATCTGCCACCGAGTGCTCAGCTGTCAGAGTGCACTTAAGATGCATTATCGAATTCACACTGGTGAGAGGCCCTTTAAATGTAAGGTGTGTGGCCGTGCCTTCACTACAAAAGGCAACCTGAAGACTCACTTTGGCGTCCACCGTGCCAAGCCTCCTCTTCAGGTTCAGCACTCCTGTCCAATATGTCAGAAGAAAttcactaatgctgttgtgttacagcagcacaTTCGCATGCACATGGGTGGCCAGATTCCCAATAACCTCCAAACTCTCCCAACAGATGCTatccaggaaaaaaacaatgactTGATTCTTGAAGAGAAGAGTTTTGACAGTGTgaatgattatgatgatgatggtcttgATGATATTTCATATGAAGAGGaagatatttcagaaaatggtGAAAACCCCCTTAACACTTTATCGGACAGTAGTTCATCACCGATTTCACCATTACCTCATGATGTGTCTGATGTTAGAACATCAGATGGTGACTCAACAGTTAGTCTTAACCAATTAACTGAACACAAGATGATAATGAGTGACATTTTTGACAACCATCCAGATAATGGCTCTCCGTCCACAGGAGAATTAGAGAATCAGAGTATTTTCTTGCCAGAGTCAGCCAACATCATTCATCCACCAACACTGAAACCAACAAAATGTCAGCCTGAGGGTCTACATGACATTCCAGTTTCGCTTAATATTACCTTTGATAAGCAAGAACGAGCAACTACAGTTAAATGTGAAATGTCTGATTCCCCAGCCCCAAATGCAATAAATGGAGCAGTGTACGATCAGATCAGGAAGTCTTTGGTCATGGAGCATGGAGCAAGCCAGAGGTCCCATGATATGGATAATAGCGTACGGGCCCCAGTTAAGATGGAGATGGAAAGTTGCAATAGGCCATACACTCCTAAAGAAGGCCCTTTTCCTGTATTTGGATCTATTCAGTCTTCACCTACGCCCTCTGAAGCAATAATCCCAGGCATGACTTCATTGTTTGGAAGCCCACCACCACGACGAACCCCTAAACAACACAACTGTAATGTATGCGGGAAAAACTTCTCTTCAGCAAGCGCCCTACAAATCCATGAGCGCACACATACTGGTGAAAAACCTTTTGCTTGCTCCATCTGTGGCCGAGCCTTCACAACAAAGGGTAATCTCAAGGTACACATGGGCACTCACATGTGGAATAACATACCTGCACGGAGAGGTAGGCGCTTGTCTGTGGAAAACCCACTGGCTCTTCTAGGTGCTGAGGCTCTCAAATTCAATGAAGTATTCCAGAAGGACCTTGCAACAAGGGCCATGAACATGGATCAGAGCTTTTGGAGTCGATATGCTGTAGCTATTAGCAATGGCTTAGCCATGAAGAACAATGAAATTTCTGTCATTCAGAATGGAGGGGTACCTCAACTTCCTACTGTAGCCATGGACAAGACGAGCAGTGCCAACAGCTCGTCAATCCGAGCCCTTGGGAAAACAAGTGTAGACCTTGCACCTGGACGACACTTCTCCATGTTGATTGATGACAATAAAGAGATTAGAATTAATTAAACTCATGAGAGGTTGGAAATAATCCCGTATGCAAAAAGACACATGGAGAATAAAACAGACGCTGCAGTATGTACCTGATGACTTTCAACTGTATATAAATTTACAATGTTGTCTTTTTCTATTGACTGGTttagttgtttttctttctgataTGTTTAAAgccagacaaaacaaaaaagccagACATAACAAATAACTCCATAAAAGTCAGACAAAACAAATAACCATAACGCAGTGGTAGTATGGTACTGCATGTGGACAATCAGTCACCAGCAGTAATACAAACTGCAACTTACCTGCAAATTACATTTGATTTGAATTTTGTATCAACCACAATTTAGCTAAGGGAATAcaaaatcaaattatttttattgtatgatcTTGAACTAGATACCACTGAAAGTAATGTTATGTTCAGTATGTCATTCTCCTCCATGTTAAAGGTactctttgggttttttttatcaggATAAAGCAATGGCTTTGTTGTGAAGCTGAAAAGGTTTTGATAAAGATATcagtttgctgttataaaatagCCCACTAGTGTCATTGCCATGAAGTAGAATATTCTTAAAGATATATTCTCTAGTTGCAATTTTgacaaataatcaaaaataaaaagacttaaCTGTATACATATAGATTAatcttttgtatttattataaggAATTTGTATTGCCATTtctctatgatttttttttcacagagaaTAAAATGCAATGGGTTTAAATTA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402435 lncRNA upstream 55284 7449750 ~ 7467646 (+) False G339721
TU402434 lncRNA upstream 68101 7449970 ~ 7454829 (+) True G339721
TU402412 lncRNA upstream 123860 7395074 ~ 7399070 (+) True G339700
TU402368 lncRNA upstream 272515 7247820 ~ 7250415 (+) True G339661
TU402366 lncRNA upstream 289823 7232884 ~ 7233107 (+) True G339659
TU402542 lncRNA downstream 141479 7672980 ~ 7674655 (+) True G339804
XR_003403651.2 lncRNA downstream 233252 7764753 ~ 7772456 (+) True LOC113535942
TU402580 lncRNA downstream 282131 7813632 ~ 7813864 (+) True G339830
TU402787 lncRNA downstream 357203 7888704 ~ 7889014 (+) True G339965
TU402875 lncRNA downstream 466582 7998083 ~ 7998288 (+) True G340047
XM_026930080.2 mRNA upstream 45268 7474707 ~ 7477662 (+) True galr1a
XM_034298549.1 mRNA upstream 244790 7236100 ~ 7278140 (+) True tshz1
XM_026930099.2 mRNA upstream 514019 6995313 ~ 7008911 (+) True cndp2
XM_034298327.1 mRNA upstream 747395 6773319 ~ 6775535 (+) True LOC113536346
XM_026929412.2 mRNA upstream 856577 6664093 ~ 6666353 (+) True rplp1
XM_034298588.1 mRNA downstream 2539 7534040 ~ 7580421 (+) True atp9b
XM_034298589.1 mRNA downstream 2539 7534040 ~ 7580421 (+) False atp9b
XM_026930035.2 mRNA downstream 61125 7592626 ~ 7636971 (+) True nfatc1
XM_026930036.2 mRNA downstream 61125 7592626 ~ 7636971 (+) False nfatc1
XM_026929554.2 mRNA downstream 124204 7655705 ~ 7664305 (+) True fbxl6
TU401977 other upstream 805784 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 907058 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 1179059 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 3167901 4352522 ~ 4355029 (+) True G338163
XR_004577079.1 other upstream 5130555 2358128 ~ 2392375 (+) False LOC113546300
TU403100 other downstream 751459 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 1381427 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 1381472 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 1693139 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 2942982 10474483 ~ 10481970 (+) True G341451

Expression Profile