RNA id: XM_026929625.2


Basic Information

Item Value
RNA id XM_026929625.2
length 2199
RNA type mRNA
GC content 0.45
exon number 14
gene id yars1
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11706658 ~ 11715821 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattataagtattcTGTACCAATgagagacttttattttgaaggcGATGACGTAACACACCCGGAAGCGTGTGTCACCGGCTTAAGCTACACGTTTTCCTAAACCACAGAGGCTCAGCGAGTAGAGGCAGGCAGGGCACCATGGGCGAAGAGCTGAGTCCTGATGAGAAGTTTAACCTCATCACTCGGAACCTTCAGGAGGTTCTGGGGGAGGAGAAGCTGAAGCTCATTCTTAAGGAAAGAGAGTTAAAGGTGTATTGGGGCACAGCAACCACAGGCAAGCCTCATGTAGCCTACTTTGTCCCCATGTCTAAGATTGCAGACTTCCTGAAAGCTGGCTGTGAGGTGACTATCCTTTTTGCTGACCTTCATGCCTACTTGGACAACATGAAGGCGCCTTGGGAGCTGCTCGAGCTCCGGGTTCAATACTATGAGCAGGTCATTAAGGCCATGTTGGAGAGTATTGGAGTCCCTTTGGATAAACTAAAGTTTGTCAAAGGCACAGACTACCAGCTGAACAGGGATTACACACTAGATGTGTACCGGCTCTCATCCATGGTGACTGAGCATGATGCGAAAAAGGCTGGGGCTGAAGTAGTGAAGCAGGTGGAGCATCCTCTCCTGAGCGGCCTGCTCTACCCCGGATTACAGGCACTGGATGAGGAGTACTTAAAGGTGGATGCTCAGTTTGGTGGCGTGGACCAGAGGAAGATCTTCACTTTGGCTGAAAAGTACCTCCCCTCTCTAGGTTACGCTAAGCGGATCCACATGATGAACCCCATGGTGCCCGGCCTAACTGGAGCCAAGATGAGCTCTTCTGAAGAGGAATCCAAGATAGACCTACTTGACAAGAAAGAGGATGTAaagaagaaactgaagaagGCCTTCTGCGAACCTGGCAATATCCAAAACAATGGAGTCCTTTCTTTTGTCAAGCATGTCCTCTTCCCGCTGCATTCTGAATTTGTGATTAAAAGAGATCCTAAATGGGGTGGAGACAAAGTTTACACGTCATATGAGGAAGTAGAGAAAGACTTTGCTGAGGAGCAAATCCATCCTGGTGATTTAAAGGCATCAGTAGAGGTGGCCCTGAACAAACTTCTGGATCCCATCAGGAAAAAGTTTGAGACACCAGAGTTGAAGAAACTGTCCAGTTCAGCCTATCCCTCAAAAAACAAGACGGCAGCAAAAGTGAACCCCAAAAAGgcagaagaggaggatgagatCATCCCATCCAGACTGGATCTCCGAGTGGGCAAAATTGTTGGTGTAGAGAAGCACCCAGATGCAGACACTCTTTATTTAGAGAAGATTGATGTTGGAGAAGAGCAGCCTCGGACTGTTGTGAGCGGACTGGTGGCCTACGTTTCCCAGGAGGAGCTACAGGACCGACTTGTGGTAGTGCTGTGCAATTTGAAGCCTCAGAAGATGCGGGGGATCGAGTCTCAGGCTATGCTGCTCTGTGCGTCAGTTGAGGGTGAGCCCAAAAGAATAGAGCCTTTGGATCCACCTGAAGGATCAGCACCAGGAGAACGTGTCTTTGTAGACGGATATTCGTCAGGGACACCAGATGATGAACTCAAGCCAAAGAAGAAGGTGTTTGAAAAGATTCAGGTGGACATGAAGATCTCAGATGAGTGTATAGCTCAATGGAGCAAGAAAGATTTGATGACCAAACTAGGAAAAATCACCTGTAAAACATTGAAGGGTGGCAGCATTTGCTAAATATTCTTTCCCTTTTCTTCAAAACACCTAATCTTCAAAACTTCAAATCTTTCATTTCCATAATAATGCACATCATTCAGGCCTTTATGAAAATCAAGGATAATAACTTGGTGAAGGTAAAGTGTCTTCATAGAGCTTCGTTCATCTCTCACATACTGTTATGTCACTTGCTGCTAAAACAATCTAAGAGCACTTGATCTGAACATCATGCTGAAACTCTATGCCACACATCGCTTGTACCGATGTCCATAATATCCCGTGTTTGGATTAGGTAATATGTGTAATCTGTTACTTGTCATGACAGGTTTTCTTATAGTGGCATTACATCAGAAGTCACCTCAGATTCCATTAATGAGTAAATAAAGGTATGAAGATGTTAAAGTACAGGGAAACAGAAGCATTGCGTACTTACATTCAAGatatgaaatcataatgtaACCAAACccatacaaaataaatatgttcaATTAAGAAA

Function

GO:

id name namespace
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function

KEGG:

id description
K01866 YARS, tyrS; tyrosyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405239 lncRNA upstream 117433 11589018 ~ 11589225 (+) True G342079
TU405227 lncRNA upstream 122803 11583642 ~ 11583855 (+) True G342067
TU405043 lncRNA upstream 232679 11385036 ~ 11473979 (+) False G341890
TU405042 lncRNA upstream 232679 11459087 ~ 11473979 (+) True G341890
TU405046 lncRNA upstream 370390 11334319 ~ 11336268 (+) False dlgap3
TU405371 lncRNA downstream 66445 11782266 ~ 11784980 (+) True G342190
TU405369 lncRNA downstream 71252 11787073 ~ 11797795 (+) False G342189
TU405370 lncRNA downstream 71925 11787746 ~ 11792642 (+) True G342189
TU405392 lncRNA downstream 147425 11863246 ~ 11930057 (+) True G342208
TU405533 lncRNA downstream 559925 12275746 ~ 12275952 (+) True G342333
XM_026929626.2 mRNA upstream 1541 11690437 ~ 11705117 (+) True mfsd2ab
XM_026929711.2 mRNA upstream 136715 11541503 ~ 11569943 (+) True fam49al
XM_034298527.1 mRNA upstream 233335 11334328 ~ 11473323 (+) False dlgap3
XM_034298526.1 mRNA upstream 233335 11447142 ~ 11473323 (+) True dlgap3
XM_026930020.2 mRNA upstream 239199 11314530 ~ 11467459 (+) False dlgap3
XM_026929909.2 mRNA downstream 53149 11768970 ~ 11773563 (+) True sync
XM_026930076.2 mRNA downstream 82235 11798056 ~ 11806421 (+) True LOC113536236
XM_026930095.2 mRNA downstream 94288 11810109 ~ 11815273 (+) True sostdc1b
XM_026930030.2 mRNA downstream 116769 11832590 ~ 11841066 (+) True meox2b
XM_034298654.1 mRNA downstream 153394 11869215 ~ 11871010 (+) True LOC117595868
TU405031 other upstream 412302 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 412628 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 1224688 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2477222 9224640 ~ 9229436 (+) False bet1
TU403492 other upstream 2790814 8912973 ~ 8915844 (+) False sem1
XR_004577055.1 other downstream 94288 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 976204 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 1070016 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 1188802 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 1361349 13077170 ~ 13081229 (+) True G342718

Expression Profile