RNA id: XM_026929640.2


Basic Information

Item Value
RNA id XM_026929640.2
length 3600
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC113535991
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5632327 ~ 5658199 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGTCTCGCCAGCGCGGACACTTCAGCGCACAGCCGGAGCGCACCGGAGCGCACACCACGGGACGCAGGGGCACACCACGGGACGCACGTCTCTGAAGCAACACACAGGACTATAGTTCCACTCAAATAACTACAAACATGTTGGATCACACGAGACAAAGAGACTTATTTCGGATTTTACTCgctttattgtgtttttgcagACAAATGCCTGGTACATGTGCTACAATCCCTCTGCAGCTCGATCCACCAAGCATTGTGGTGCCATTTGGGAGCCCCGTATCTGTGAACTGCAGCACGAATGTCACAAATGCAAGCATGGGCTGGGAAGCATCTCAGGGACAAAAGGACATGGTGGAAAATGTCACATTCATTACCTGGACCGTGAAGAGCCTTGTGCACTGGGACATAAAGCCAATCTGCTTCGTCAATGTCAATGAGCAAGATATGCTGAGTCTCAATATTACTGTATACAAGCCTCCAGACCGGGTTTCCATCAGCACTGTGGGTCACACAGGGCCGATGATTGAAGGCAGCCAGTACGAGCTCCAGTGTGATGTTCAGAATGTTGCTCCTGTTCATCTCCTCACTGTGAACTGGTACAAAGGACAACATCTagtgaaaagagaaaactttTCTGACATGAACGAATTTCCAGTTAATGAAACTCTGACACTTCAGATCTCACCGCACAGAGGTGATGATGGAACTCAGTACAGATGTGAAGCAGAACTGCAGCTGGGACCAGAAGGACCTCAACCTCCTCCTTTAGTGAAATCAGATCCTCTAAATATTACAGTGCACTATGGACCTGAGTTTTCAAACTGTCCTGATGTTGTGCATctgaaggagggagagagtcTGGCAGGCTACTGTAATGTCACAGGAAAACCACTGCCTCATTCCTACTGGCAGAGAGAGGGGGTTCCCATTGACCCTGCCATTCCACTTAATAGGACCTCAAGTGGACAGTACAAAATCATCACAAACAGGAATACTACTAAGTCCCTGAAGGTGGAAGTCATATATGGACCAGAAATTTCATGTGAACTCCATTATACAGTCAAGGAGAATGAATATTTCAGACCCAGCTGCACGGTTGTAGGTTATCCTTTGAGTGAAATAATTTGGTATAAAGATGGAAACATAGTAGAGTTCCCACAAACAATGTACAGGACAGATGCAGGGCAATACACCATAACAGCAAGCAACAGCAACTCAGCAGCAAGTCACACAATGGAAATCGACGTCTTGTATCCACCCTCTGAGATTTCAGAGCTGCAGGATGTACAGGTATCTAGTGGAGAAGATGTGGTGCTCAAGTGCTCTTCTAATGCCAATCCTCGGCCCAGATACAAATGGATCTACCATCGGACATCTAATGTGCGTGCCGAGGACCAAGATGGCGTGTCTCTGCTGCACATAACCCGTGCTGGTGGAGACAACATTGGCAAATACATATGTATTGCCTATAATGATCTGGGAGAAAGGACACAAACGGTCCGAGTTGGTGTTCAAGgtGTAAAGGCTACATGTCCACTTTCTATCAGCCCGCAACATGTAGTGTTGGAGTATGGCGAATCTATCAGCGTGGAATGTTCATCTAAAGAGTCTAATAGAAACTGGGGTTGGAAATTTTTAGACAGCGTGTCCAACGAGAGCACCTTGGTAATTAACTCTGACTTGTTTATTGACATCGTGGGCTGGAATGGAAACGTGTCATGCTACGGAGATTTTGTGGGACTTGGTTATTGTCAGAAAGATTTGGATATTACCATTTACAAGCGTCCAGACCGGGTGTCCATCAGCACTGTGGGTCACACAGGGCCGATGATTGAAGGCAGAGAGTACGAGCTCCAGTGTGACATTCAGAATGTTGCTCCTGTTCAGCTCCTCACTGTGAACTGGTACAAAGGAAACAATCTAGTGAAAAATCAAAGTTTTGATGAGACCACGAATCCAGCTGATAAAACTGCGACACTCAAGATCTCCCCAAGCAGAAACGATATTAAAACACAGTACCATTGTGAAGCCAAGCTGAAACCGGCACCAGATAACTCTACCGTGAAATCAGATCTTCTCAACATTACAGTTCACTACAAACCGGCTATAACGGACAAATTGCCACGGTGGGTCCCGGTGTTTCACGACTATCCGGCGGTGCTCGTTTGTGAGGCCAGTGGGTATCCACCGCCCACTATCGCATGGATCTTCAACAACAATAGATCGGAAGGTGGAAACCTGACAGTAAAAGAGAACGGCGTATATAAATGCATCGCATACAATTCTGTTGGGAATGACAGCAGAGTGGTCAATGTAGTCATGAAAGAGGATTACCTGCCCCTGATCGCAGGTTTTGTTGCACTCGTGGTGGTGATCATCTCAGTCATCTTCCTCAGCATCTACTCCATCTACTACAAAAACACCAAGATGGGCCACTACACCGTGGAGGGCGCCAAGCCCAGCGCTCAAAACGGCAACATAGCGCAGAACGGCAAAGACAGTACAATTCCCATGAAGAAAATCATGGTGTAGGATGTGCTTTTAGTTATTTTGTTTTCTACTATACAGACGTCTGGCACGCAGCAGTTCCAGTGATCTAAGAGTGGAACGCCGTTAAACTGGGATAGTGGATATCCACCGGCGCGCTAGACTTCACTGAGAGTTTAGCTGGCTCATTTGGATTTGTGCTCCATTTAACACTATAAATCACCTAGTATTTCATCTGCAATACATATCAAGCCTACAGTCtcatatattaatacatatCATCTTGTGGATCTGTCAGAGGAGCccattttaattaaactacTGTTTACTGTGTCAGTAATAAAGAACTACTGCGGATTTTGAAGCCAGTATCTAGGAGACCTATTCTGTCTTCTGTTGAGAGATTTTTATTTCGCCATTCATCATTTAGTATTTTCTCTGAAATTGCGTGTGCTAGTGTAACCCACTTGATCACGACACTGCTGAACTGTGTACCGTGCACTAACTTTAATGCAATGATGAAGGCTTGTGGAGTTCTTTTATCTCTCCCGTTGAACGCAGTGCCTTAGAAAAGAAATACTCAGTAGAAATACTGATCATTTTAAAGACATcaaaaaagcatatttattttcacaaactGTACATTTGCAGACATTGAATTGTGTTAAATTCTTGATGTATATAGATATGTAAAATATCATTTCAATTCTGaatgtcctaaaaaaaaaaattgcacttggGAATAATGTCTCGTGCGACGTCGAAGGAATGACTGCAACACAGTGAAAATGTCCATCATCAGTGTTAAAATACTGGGAATGGTGCTAGGGACGGCACTGGAATGTACTCATTACGGACTGTTGAAACGGGAGAGAGGAGATAAGCTGAGTGAACCCGGGCAATGACTCAAGCCGTTTCCCTCCTGCCTTTGTGTTAATGTACTCAACATACACTAGCGTGTGTGTCTTTAAAGATAAGCATGCCTTCTGCCCTAGCACTGTTTCGttctatttaattatatatgtatatatcatgcttattcattgtttttttttctatttgtaaatgcttttatttagaGATTAAAAATCATTCTTTTTATATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401352 lncRNA upstream 105725 5525040 ~ 5526609 (+) True G338814
TU401337 lncRNA upstream 200070 5431849 ~ 5432264 (+) True G338799
TU401215 lncRNA upstream 240142 5387988 ~ 5392192 (+) True G338683
XR_004577050.1 lncRNA upstream 246182 5377206 ~ 5386152 (+) True LOC117595846
TU401186 lncRNA upstream 390750 5241325 ~ 5241584 (+) True G338658
TU401392 lncRNA downstream 78280 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA downstream 78280 5727178 ~ 5728022 (+) False G338842
TU401536 lncRNA downstream 205760 5854658 ~ 5855430 (+) True G338961
XR_003403669.2 lncRNA downstream 326974 5975872 ~ 5981732 (+) True LOC113536203
TU401647 lncRNA downstream 338913 5987811 ~ 5988492 (+) True G339055
XM_026929400.2 mRNA upstream 111787 5513096 ~ 5520547 (+) True eif3g
XM_034298492.1 mRNA upstream 121132 5473942 ~ 5511202 (+) False LOC113536275
XM_026929494.2 mRNA downstream 16274 5665172 ~ 5669016 (+) True oxsm
XM_026929889.2 mRNA downstream 20794 5669692 ~ 5672989 (+) False cfap20
XM_026929890.2 mRNA downstream 20795 5669693 ~ 5674191 (+) True cfap20
XM_034298744.1 mRNA downstream 55773 5704671 ~ 5721562 (+) False zgc:63863
XM_034298742.1 mRNA downstream 55774 5704672 ~ 5726395 (+) True zgc:63863
TU400576 other upstream 1277305 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3239856 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3239862 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3239959 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3262258 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 690609 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 955759 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1062117 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2634062 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3264030 8912928 ~ 8915844 (+) True sem1

Expression Profile