RNA id: XM_026929670.2


Basic Information

Item Value
RNA id XM_026929670.2
length 1381
RNA type mRNA
GC content 0.50
exon number 10
gene id snrnp40
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12703037 ~ 12709593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTCCGAGCCTGAGCGAGAGCTTAATGGCGGATAGTGGATGGTGGAGTGCTTAGTTCATACAAACTCCTGCCACGAGAGAAATTGTGATAAAtcattctttttctgtctttttcctgAACTGCAGCCGCTGTAAACAATGATTGAAGCCATGAAGCGCGGCGCGGACATGGCGCTCGTTCCCGCGGGGGTGAAGAGGCCGAGGACCGAGCTGGTGGCCGCGGCTCAGTCCCAACAACTCGCTACCATGGGTCCTCCACGCAGCTCCAGTTTGCAGGCTCCTATAATGTTGTTGTCTGGCCATGAGGGAGAAGTCTACTGCTGCAAGTTTCACCCGAACGGCTCCATGCTCGCTTCTGCAGGATACGACCGCCTCATCTTGTTATGGAACGTGTATGGAGAATGTGAAAACTTTGCCACACTAAAGGGCCACACCGGAGCTGTAATGGAGCTTCATTATAATACAGACGGCAGTCTGCTCTTTTCAGCCAGTACGGATAAGACAGTTTGTGTGTGGGACAGCGAGACGGGTGAACGTGTGAAGCGACTGAAAGGCCACACGTCCTTTGTAAACTCTTGTTTTCCTGCTCGCCGTGGTCCACAGCTGGCCTGCACTGGCAGTGACGATGGAACTGTGAAGCTGTGGGACATCAGGAAGAAGGCGTCCGTTCATACGTTCCAAAACACATACCAGGTTCTAAGTGCTACCTTTAACGACACCAGTGACCAGATCATCTCAGGAGGCATCGACAATGACATCAAGGTATGGGACCTGAGACAGAATAAGCTGATTTACAGCATGCAGGGACATGGAGACTCAGTGACGGGACTCAGTCTCAGCTCAGAGGGATCCTACTTACTGTCCAACTCCATGGACAACAGTGTGCGCGTGTGGGATATCCGTCCATTTGCCCCTAAAGAGAGATGTGTGAAGATTTTCCAGGGAAATGTCCACAATTTTGAAAAGAATCTTCTGCGCTGCTCTTGGTCACCAGATGGCAGTAAGATAGCGGCAGGCTCCGCTGACAGGTTTGTGTATATCTGGGACACGACCTCTCGTAGAATCCTTTATAAGCTTCCTGGTCATGCGGGATCAGTCAACGAGGTGGCCTTCCATCCAGAGGAACCCGTTGTGCTGTCTGGATCCAGTGATAAGCGCCTCTACATGGGGGAaattcagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagtgccCGAGAGAGCATGGCGGTAGGGGTGGGGATTAATGAttttgagaaacagaaaaattcaATTTTGAGACAGTCCTTGGCCGTGGATAGAATGTTCAGTTCCTTTTCTATGCTTTTAATAAACTCATTTTTGGATAAATGAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K12857 SNRNP40, PRP8BP; Prp8 binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577006.1 lncRNA upstream 15824 12684133 ~ 12687213 (+) True LOC117595825
TU405914 lncRNA upstream 23707 12679115 ~ 12679330 (+) True G342629
TU405913 lncRNA upstream 25840 12676848 ~ 12677197 (+) True G342628
TU405912 lncRNA upstream 27686 12675141 ~ 12675351 (+) True G342627
TU405904 lncRNA upstream 54320 12648495 ~ 12648717 (+) True G342621
TU406059 lncRNA downstream 437452 13147045 ~ 13147846 (+) True G342735
TU406167 lncRNA downstream 591946 13301539 ~ 13301803 (+) True G342836
TU406909 lncRNA downstream 1053491 13763084 ~ 13766601 (+) True G343522
TU407024 lncRNA downstream 1259641 13969234 ~ 13994319 (+) True G343620
TU407094 lncRNA downstream 1366864 14076457 ~ 14078541 (+) True G343671
XM_026929677.1 mRNA upstream 7525 12692007 ~ 12695512 (+) True fabp3
XM_034298401.1 mRNA upstream 37968 12650217 ~ 12665069 (+) False arpp21
XM_026929426.2 mRNA upstream 37968 12650218 ~ 12665069 (+) False arpp21
XM_026929425.2 mRNA upstream 37968 12650218 ~ 12665069 (+) False arpp21
XM_026929424.2 mRNA upstream 37968 12650220 ~ 12665069 (+) True arpp21
XM_026930141.2 mRNA downstream 5114 12714707 ~ 12723544 (+) True nkain1
XM_026930137.2 mRNA downstream 17523 12727116 ~ 12743818 (+) True pum1
XM_026930139.2 mRNA downstream 17523 12727116 ~ 12742671 (+) False pum1
XM_026930136.2 mRNA downstream 17704 12727297 ~ 12742671 (+) False pum1
XM_026930140.2 mRNA downstream 25337 12734930 ~ 12742671 (+) False pum1
TU405918 other upstream 7525 12692025 ~ 12695512 (+) False fabp3
XR_004577055.1 other upstream 887764 11810109 ~ 11815273 (+) False sostdc1b
TU405031 other upstream 1408681 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 1409007 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 2221067 10474483 ~ 10481970 (+) True G341451
XR_003403671.2 other downstream 76244 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 195030 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 367577 13077170 ~ 13081229 (+) True G342718
TU407134 other downstream 1496143 14205736 ~ 14219690 (+) False slc30a8
TU407132 other downstream 1523964 14233557 ~ 14249520 (+) False med30

Expression Profile