RNA id: XM_026929682.2


Basic Information

Item Value
RNA id XM_026929682.2
length 5298
RNA type mRNA
GC content 0.43
exon number 11
gene id poc1bl
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9761655 ~ 9779711 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTGTCAGGGGCCAAGGCACAGCGGTAGCGTGCGAGAGTGTCAGTTAAGACGAGCGTTACATGCGGATTTACTGTAGCGCTACTTTTTGATCTTGTTCCGGGATCCTGCACACGAGTACCAGCGCGAGTGTGTTGTACGTGGCAGCAGTGTTGTAGCGTGACTTCAGCAATGCGAGGGTAAAACAGCCCAGCACAGACACAGCGCACTTCAGATGTCTGATTAGTGACTAATCTCACTGTGTCCTGCTGAGAATGGAGCTGTGGATGAAGATGTGCTGATAGCGGGCTAATGTTATAACATTACACTGCGCTCGAGCGGCCAGGAAAACAGCTAGCTTGCTAAACGTCCAGCATTTCTGTGAAGTTGTTTGGCGAgctttctgctgctgctgtggtgGTGGTCCAGGAGAAACACGGAATGCCGAGAACCGTGACTAGGGTGCTTTGATTGGCAGCTGTGAGTGCCACCCGTGGCCAGGAGGATGAGGGTGCGCTGGTCGAGGAAGGTGGCTCTTGTGACAAAGGCCGGCTTCTTCCTCTCTGTTCTGTGGCTCTTCTACCTCCTCCTGTTCCGCTCTTCCAACACAGCTCCGGCCAAAGACGGTGGCAAACACAGTATACAGGCCCGGGGTGTCTTTACGCAGGGAGAAGAGGACGCAGAGACCTTAAAGCGGCCCGTTTATGTGAAGCCCCCTCCTGACCCAAGGGCAAATGGAGAGTGGGGCAGAGCCACCCGACTGAACCTTAACTCCGAGGAGAAGAAGCAAGAGCAGGACAGCATCGAGCGCTATGCCATCAACATCTACGTCAGTGACAAGATATCCCTCCATCGCCATATTGAGGATAACAGGATGCACGAATGTAGAAGCAAGACGTTTGACATCCGTCACCTTCCGACCACATCCGTGATCATCGCCTTCTATAACGAGGCCTGGTCCACCCTGCTAAGAACCATTCATAGTGTGCTGGAGACCACACCTGCTGTTCTGCTGAAAGAAGTCATTCTCGTTGATGACTTGAGTGACCGAGGCTATCTGAAATCCCAGCTGGAGGAGTACATTAGCAACCTGGAGCGTGTGCGCCTCATCCGCACTAACAAGAGAGAGGGACTGGTCCGAGCTCGGCTTATCGGTGCCACCTATGCCACAGGAGATGTACTCACCTTTCTGGACTGccactgtgagtgtgtgcctGGCTGGATCGAGCCTCTGCTAGAAAGgattgcTGAGAAGCAGGACACTGTTATATGTCCGGTGATCGACACCATTGACTGGAACACATTTGAGTTTTACATGCAGACTGGTGAGCCCATGGTGGGTGGCTTTGACTGGCGGCTTACATTCCAGTGGCATTCCGTGCCTGAGGTGGACCGCAAAAGACAGAAATCCCGAATAGACCCCATTAGATCTCCCACCATGGCTGGGGGCCTGTTTGCCGTAAGCAAGGCCTACTTTGAATATCTGGGCACTTACGACACAGGCATGGAGGTGTGGGGAGGAGAGAATCTGGAACTTTCCTTCAGGGTTTGGCAGTGTGGAGGCTCACTGGAGATTCATCCCTGTTCCCATGTGGGACATGTCTTCCCTAAGAAGGCACCGTATTCCAGGCCAAAGTTTCTCCAGAACACAGTGCGAGCTGCAGAGGTCTGGATGGACTCTTACAAGGAGCTTTTCTATAACCGCAACCCTCCAGCTCGTCGGGAAACGTACGGGGACATTTCAGACAGGATTCTCTTACGAGAGCGGCTAAAGTGCAGGAACTTTGACTGGTATCTAAAGAACATCTACCCAGATCTGCACGTGCCTGAGGACAGACCTGACTGGCATGGAGCTGTGCGTAGTGGTGGGATTCCCTCGGAGTGTCTGGACTACAACGCTCCTGATCACAATCCCACAGGGGCTCACCTGTCTCTGTTCGGCTGCCATGGACAAGGAGGGAATCAGTATTTTGAGTACACCTCGTATAAGGAAATCCGCTTTAACTCAGTAACTGAGCTGTGTGCGGAGTATGTAGATGGCCAGAACCACATAGGAATGAAACACTGTCCTCGTGACGGGGAGCCGGTTCCTCCCAACATCGTCTGGGAGTTCAGAGATAATGGAATTATCTATCACCCTCTGTCAGACAAGTGCATAACTGCATACCGTACAGCAGAGGGGCGGACCGACGTGCACATGCAGAAATGCTCTAGTGAAGACATGAACCAGCGATGGAAGTTCGAATGATTGTGATTTCCACATTGCATCCAATTCAAGAAGTGCATTTTCTATGAAGTCCAAGCATCTATTCAGTAGCTTGTTCAAACAGTcagtaattttcattttattctgcaCTGTGATTTTATAAACTTAATGGTCAATCTGACTGGATTGGAGTGGAATTAAGAGGTACTACAGGAATAGAAAGCAGCTACTTCGGTTGCTGAGaaagaattttaattttaattgttgttCTCTGACAGAAATGTGGAAGGCCTGTGGCTTGTTAGACTAGGCTCGGTTGAGTAGACTGGGCTCGGTTCGGTGCCTTTGAAAGCCAAAGGTGATCAAGTCtcaatttttattgtattttttttctctgttttatcCGGTCTCTTGAATAGGATGCACATTATCAATAACGGTGCAATACTGTACCAAAATTCCCTTCAGTAGCAGTATGGGGAAGGAAATATAGTTGTGTTGGAACACCATTTGTGTTTACATGATTGCACTATGTGTTGATACTTCAGCAGAACTGTGAGTTGTGACTATTTGGTCAAAACTCAGcttttgtatttataattagtttatttttagatGACAAGTATTTCAGGGAGTGGCAAGAACCTGTTTAGCTTGCCGTACTcttttgtttcctctgtagtcaTGACATTCTAGccatgacatttaaaaaaaaaaaaaaaacatgtcagtttGTACCTGTACAAAGCCCTGTTGAAGTCTTTCTATTATGTTGTGGGTTTGTCTTGTAACCTCCACAAACGTGTTCTGCACCAACACACTGTGCCTTATTGCTGTGATCTCAACTGTGACATCTCTCAAGCTGACTTCATAGATTGAGTTTCAGTTTAAAAGCTGATCATGGAGGCCAAACTTTAAGTCGAGAGATTTATGAAGGAAAATATCCCTGAAATCAAATCAGTTTATGGGAACTGCTGTGCCTTATTCAGATAGGAAGATAGGAAGCAAATGatttttaacaccacacacaggTGCTCTCCATTTCATTATGTACACGATGATAGAGGGGGAAATAACCTGAATGAAATTTCTCTTTTTATGAATGGTGGTAATATAAAGAATTATCTCAAAATGTACTAAAATGCGGTGAGATGTTTGTTCAGTGGAATTTATGCACATATATGTGAACATGTCCACAAAAAACTGCCTGTGTCGTGCCATCCTGGccactttctgtctgtctattttcaTGCTTTGGGTGTAACGTATCTAAAGTGTCACATATAGGAATTTAAAAGGTTTTCTTAAATGGTAGCCAAAGGAAAACATTTAAACTGCTGTTAGTCATTTACTTTCTTAAGTCTTCCAGATGTCAAAATAACACTGTATAATTGTATGTTTGAAGCAAAATAGTTTCACTTAGGATTAGCAGGAGGTCAGTTACAGGACCAGTCATTCCTCTGATCTGAAATTCCAAGGACATTACATGACACTGTGGCCTTAAAAAATGGACCTTTTTCGGATTTCGCATTTGCAATATTAATCAGTCATTTCTGGGGATAAatctgttttaatgtttataggTGTTTGTTTGAACATGGTATAAAGGGACCTTTATGTTATGgtgtaaatgaatatttaaaactaCTGATTAAGCACAAACTGTGGTGATTACCTTCTGTaccatacagtataataattacattatgttCATTGTACTGAATCAACCATTTTAACACAATGACCAGTATGGTTTAAATGGatcaaatttgttatttttgaacaaatgaaaatgcaacTTTAGGCACTATAAAACCAAGAAACATTTCCTGTGTGTTTCCCCTTTTTGTGATCTGTTGCAGtgccatcttgtggtaaacATTAAATTATTGCCATATGATTCATATTACATGATTTGACCATGTCTCTTGATCTTCTGCGTGGTTTTAAAAGATTCCACATTAGGTGTGCACTGTAGCATAGTTTATTACAACAGCCTTTGTCACTTTTACAGTAAGAGTACTCAAATCACGTGGTACTCAGATTACTGTCTCATCTCACCAATTATTGATTTTAATTTGGATAAACATTTTGCTCCACACATCATGTCAGCTTTAATAGATATCTAGTTTCCACATATTGATAGAAAAAAGCAATCCTATCCCTTTTCTGAGAACCTCAGGTTGCGAGTAAATTTTAAGCCCTATGACCAGCAAGACAgtttgcacacacaaaaaaatgtatctaCTGAGGTGAAAATGTGTATTCAAGTCACAGTTTAAAAgctgttcattcatttcttaGGCCAATACAAGAAAAAGGCAACACTGTGCAATCCGTAATGCTTCAAATGACATTAAGCTGCAAGTGAGCCCACCATGTACCAACATGTTTCGCATGACTGATAGGCCTGATACACCTGTAGTGATATGAAAGATAACCATCAGTTCTAGTCATCTTTTCCTGACATTCAGTCTAGACAACATGGATCACAGCAACATGAGAGGTTGTACCTTTCtgtctgcaaaaaaaacccagcaacTTCATCAGGAATAATAGAAAAATCCCACAGCGGCACATTCTCAGGCTCAGAGTGACTGTAAAAAATCACTCCTGTTACCAGTGACGGCTGGTCTTCTAACATCAATCAGCAGCTTGACAACAGACTGTTAGGGTTGAGAAATGGATTATATTATGTGGTCTAATCGATGTCTTAgtaagaatgatgtggggcaaactatcacacacacttaaaggcagataAGTAGCTGCATTCTTGactttcatcattttttaaaaggtgTTTCAAGTCAGTAATGCACTGCTGGACCTACTGGTTTCCTCTGAAtacaaacatggtaaacagaaaagttgtaacaTTAACTAATCTGTTATGTCATCTGTtcttttgtgtcatttgtacTTAGACAAAGTGTTCTTAGTCTGTCTACTTTtaatttctcctccaaaggcatttttttgtggaaaaaagggtgatagagtaaataatctaCCTTATTTGCATTCATTACATCCATGactatttcacatgtgatttctcCATCACTGTTGATGATGTGTTAAGGAAGCATGTAACAATAAAATTCAAAGGAA

Function

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404103 lncRNA upstream 30686 9728928 ~ 9730969 (+) True G341038
TU404020 lncRNA upstream 92427 9627788 ~ 9669228 (+) True G340967
TU403973 lncRNA upstream 196129 9557697 ~ 9565526 (+) False LOC113536134
XR_003403660.2 lncRNA upstream 201282 9557738 ~ 9560373 (+) True LOC113536134
TU403683 lncRNA upstream 514607 9246479 ~ 9247048 (+) True G340687
TU404499 lncRNA downstream 414065 10193776 ~ 10197002 (+) True zgc:91910
TU404568 lncRNA downstream 618499 10398210 ~ 10398409 (+) True G341468
TU404570 lncRNA downstream 619242 10398953 ~ 10399867 (+) True G341469
TU404547 lncRNA downstream 657693 10437404 ~ 10458143 (+) True G341449
XR_004577048.1 lncRNA downstream 666617 10446328 ~ 10447955 (+) True LOC117595845
XM_026930186.2 mRNA upstream 143630 9604471 ~ 9618025 (+) True pex1
XM_026930187.2 mRNA upstream 143630 9604471 ~ 9618025 (+) False pex1
XM_026929443.2 mRNA upstream 161306 9597569 ~ 9600349 (+) True efcab1
XM_034298535.1 mRNA upstream 167123 9580915 ~ 9594532 (+) False LOC113536235
XM_026930023.2 mRNA downstream 2504 9782215 ~ 9801084 (+) True galnt12
XM_026930073.2 mRNA downstream 24325 9804036 ~ 9806104 (+) True LOC113536234
XM_026929439.2 mRNA downstream 42992 9822703 ~ 10006532 (+) True gabbr2
XM_034298365.1 mRNA downstream 85553 9865264 ~ 10006532 (+) False gabbr2
XM_026930031.2 mRNA downstream 262713 10042424 ~ 10047887 (+) True abitram
TU403677 other upstream 532219 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 845811 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 845811 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 1476451 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 3044509 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 694772 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 1512613 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 1512613 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 2030398 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 2912314 12692025 ~ 12695512 (+) False fabp3

Expression Profile